1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgcacacttctgactctccatgtagcacaagagttaaaatctttccgtggattttctgcaatcaatgttctatattaatgttatatcagagttggagaattattgattcacttatgcttgtagcgaggacaacaatttaccgagcagtttcgtgtgattctttttttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTGTCGAGGAAATTATCAGTGAGGATTTGAACGGGTTGACCGAGTACGAGA
species | Physcomitrella patens |
transcript | PP1S79_110V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAG GTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTEST: gi|37840321|gb|BJ598329.1|BJ598329
genomic: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAGgtttgcacac ... tttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
EST: CAATGGATGGCGACTNTGATGTTTATGAGTGCGCTTACGTCCAATCCGAG GTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTEST: gi|162153053|gb|FC330083.1|FC330083
genomic: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAGgtttgcacac ... tttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
EST: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAG GTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGANAGAAGGGTEST: gi|162168311|gb|FC344625.1|FC344625
genomic: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAGgtttgcacac ... tttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
EST: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAG GTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTEST: gi|162195924|gb|FC375657.1|FC375657
genomic: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAGgtttgcacac ... tttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
EST: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAG GTCACGGACCTGCCTTTTTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTEST: gi|7147878|gb|AW509800.1|AW509800
genomic: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAGgtttgcacac ... tttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
EST: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAG GTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
genomic: CAATGGATGGCGACTCTGATGTTTATGAGTGCGCTTACGTCCAATCCGAGgtttgcacac ... tttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGT
gtagcgaggacaacaatttaccgagcagtttcgtgtgattctttttttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTGTCGAGGAAATTATCAGTGAGGATTTGAACGGGTTGACCGAGTACGAGA
tgattctttttttttc CT-rich tract
tgattcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcacacttctgactctccatgtagcacaagagttaaaatctttccgtggattttctgcaatcaatgttctatattaatgttatatcagagttggagaattattgattcacttatgcttgtagcgaggacaacaatttaccgagcagtttcgtgtgattctttttttttctcagGTCACGGACCTGCCTTTCTTCGCCACCACGCTGAAGCTCGGAAAGAAGGGTGTCGAGGAAATTATCAGTGAGGATTTGAACGGGTTGACCGAGTACGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT