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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaccaggtcaggattttttgttttgtctgtatgaaatatgctgaagtccgtggcagtctgttctgctatgaatcaagtcataacttgtgatcactagatctcagctcattttgaaatctcttctttaatctgactgcactggaaattgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGACAATATTGCCCATGTCCAG

Basic information

species Physcomitrella patens
transcript PP1S73_244V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389659|gb|BY952465.1|BY952465
EST:     AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTG                         TTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
EST: gi|100389158|gb|BY952362.1|BY952362
EST:     AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTG                         TTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
EST: gi|100442226|gb|BY981250.1|BY981250
EST:     AGCTCTACCGTATTGATCACTATTTGGGGGAGGAGATGGTACAAAATTTG                         TTGATTATGAGATTC
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTC
EST: gi|208398370|gb|DC912327.1|DC912327
EST:     AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTG                         TTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC
genomic: AGCTCTACCGTATTGATCACTATTTGGGGAAGGAGATGGTACAAAATTTGgtaagtacca ... tgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagctcattttgaaatctcttctttaatctgactgcactggaaattgttgcgcagTTGATTATGAGATTCGCCAACCGATTCTTTCAGCCTATCTGGAATCGGGACAATATTGCCCATGTCCAG
                          atctgac  putative branch site (score: 3)
      attttgaaat  TA-rich tract