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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtggacttcatttcatcttagtatcttagcattcttaaaccattctattgttgttgggcttacgtggtgaaaatgggatggtggcaattggggggtcagAACATCTGCAGATTTGTTCAAGACAGCATTTGATCTTCTGGTGTCAGTGACACTCTTTCTAGGCCGATTTGATATGAGGACTATGCAG

Basic information

species Physcomitrella patens
transcript PP1S72_100V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S72_100V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G135839_T01 (Zea mays), 3'ss of exon 6
gtgcgtggacttcatttcatcttagtatcttagcattcttaaaccattctattgttgttgggcttacgtggtgaaaatgggatggtggcaattggggggtcagAACATCTGCAGATTTGTTCAAGACAGCATTTGATCTTCTGGTGTCAGTGACACTCTTTCTAGGCCGATTTGATATGAGGACTATGCAG
  |   || ||||     || | |  |  | |      ||| |  |  | |        |  || | ||| ||||  |   ||  |  ||          ||| ||||| || ||||| ||||||||||||||||||||| |||| || ||||| || ||| | || |||||||| ||| | |  ||||||
--gtagggccttctacaaatttaaccacatcaag----ttagatgaaaccaacaaaaaagacctgatgtgttgaattt---atatttaca----------cagGACATCAGCTGATTTATTCAAGACAGCATTTGATCTTATGGTCTCTGTGACTCTTTTTGTTGGGCGATTTGACATGCGCATGATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattgttgttgggcttacgtggtgaaaatgggatggtggcaattggggggtcagAACATCTGCAGATTTGTTCAAGACAGCATTTGATCTTCTGGTGTCAGTGACACTCTTTCTAGGCCGATTTGATATGAGGACTATGCAG
            ggcttac  putative branch site (score: 3)
                       tgaaaat  TA-rich tract