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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgttttctttttctttttttttgggtcatgatatatagtttgtacacatcgtagtctgattttatcttacgaaaggtgaggtttttgtacgtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATTGTTCCTTCCAAAGATTTCTTGTCATTTATGTTCTCTGTTATATTTTTCT

Basic information

species Physcomitrella patens
transcript PP1S42_16V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100395346|gb|BY953691.1|BY953691
EST:     AGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCNTAA-C-ATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: AGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACC-TAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|162231292|gb|FC406533.1|FC406533
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|162231291|gb|FC406532.1|FC406532
EST:     AGCAGGCTCTGCTG-TGNCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: AGCAGGCTCTGCTGTTG-CGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|162237827|gb|FC412480.1|FC412480
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|208363997|gb|DC939590.1|DC939590
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|208376982|gb|DC911050.1|DC911050
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|162154890|gb|FC331932.1|FC331932
EST:     GCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: GCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|208371600|gb|DC952242.1|DC952242
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|7207567|gb|AW561615.1|AW561615
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTNTAGAAGCACTGCAGCAGTGGATGCAGATTAT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTAT
EST: gi|100448633|gb|CJ972932.1|CJ972932
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AAAACCCGTGCCTGGACTTNA-AANCACTGCAGCAGTG
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTG
EST: gi|162154889|gb|FC331931.1|FC331931
EST:     TGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|100387757|gb|BY951757.1|BY951757
EST:     TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGG                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
genomic: TAGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACCATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATT
EST: gi|100403625|gb|BY955020.1|BY955020
EST:     AGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTNAACCCATCG-                         AGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTAT
genomic: AGCAGGCTCTGCTGTTGCGTGTGCTCACTCTCTTTACCTAAACC-ATCGGgtatagtcaa ... gtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcgtagtctgattttatcttacgaaaggtgaggtttttgtacgtgtgtacagAGACCCCGTGCCTGGACTTTAGAAGCACTGCAGCAGTGGATGCAGATTATTGTTCCTTCCAAAGATTTCTTGTCATTTATGTTCTCTGTTATATTTTTCT
                  atcttac  putative branch site (score: 3)
             attttatctta  TA-rich tract