1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaggtgtcgagattgggacttgaattgtggcagaggtcttgttgcgttacccttgatgtgcacgaagtgcctgacagtcgtgacgtgtgcatcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGCGGGCTTCAACCCTATCGAGATTGAGCTTGTCAGGGAGTTTCCTATCAA
species | Physcomitrella patens |
transcript | PP1S419_7V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAG CCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGEST: gi|162270721|gb|FC446334.1|FC446334
genomic: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAGgtactcccat ... catcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
EST: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAG CCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGEST: gi|162256588|gb|FC432898.1|FC432898
genomic: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAGgtactcccat ... catcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
EST: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAG CCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGEST: gi|162256626|gb|FC432936.1|FC432936
genomic: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAGgtactcccat ... catcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
EST: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAG CCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGEST: gi|100386918|gb|BY988187.1|BY988187
genomic: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAGgtactcccat ... catcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
EST: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAG CCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGEST: gi|162168254|gb|FC344984.1|FC344984
genomic: CGGCAAGGATAACGACCTCCTGAAGTTTCCTCTTCCTCGGATCTTGAAAGgtactcccat ... catcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
EST: CTTCCTCGGATCTTGAAAG CCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
genomic: CTTCCTCGGATCTTGAAAGgtactcccat ... catcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCG
cgttacccttgatgtgcacgaagtgcctgacagtcgtgacgtgtgcatcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGCGGGCTTCAACCCTATCGAGATTGAGCTTGTCAGGGAGTTTCCTATCAA
gcctgac putative branch site (score: 53)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaggtgtcgagattgggacttgaattgtggcagaggtcttgttgcgttacccttgatgtgcacgaagtgcctgacagtcgtgacgtgtgcatcgtgaagCCGATGAGAAAGCGTGGCAGACCGACGCCGAATTTGCCCGGGAGTATCTCGCGGGCTTCAACCCTATCGAGATTGAGCTTGTCAGGGAGTTTCCTATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT