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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttagtctaaccagaacctcatcgtcaaggtcgttttgattcgtagaatcccgccgtatatcctgtcagatgatgatgtgcagccatcttaacggattccttacatttagcttcctggatgacagGTATATTTCATCTCCAAAGGCAGCTTGCGTATGGCGAATAAACAATACGCTACCGTAAAAAACGACTATGAAATGACGCTCAACAGCAATTCTGAAATTG

Basic information

species Physcomitrella patens
transcript PP1S257_1V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100378584|gb|BY968675.1|BY968675
EST:     TGTTTAAGGAGGCTGCTGACAAATTCTATGACGTTCTGCAACTGGACAAG                         GTATATTTCATCTCCNAAGGCAGCTTGCGTATGGCGAATAAACAATACGCT
genomic: TGTTTAAGGAGGCTGCTGACAAATTCTATGACGTTCTGCAACTGGACAAGgtctttagtc ... tggatgacagGTATATTTCATCTCCAAAGGCAGCTTGCGTATGGCGAATAAACAATACGCT
EST: gi|100359872|gb|BY947164.1|BY947164
EST:     TGTTTAAGGAGGCTGCTGACAAATTCTATGACGTTCTGCAACTGGACAAG                         GTATATTTCATCTCCAAAGGCAGCTTGCGTATGGCGAATAAACAATACGCT
genomic: TGTTTAAGGAGGCTGCTGACAAATTCTATGACGTTCTGCAACTGGACAAGgtctttagtc ... tggatgacagGTATATTTCATCTCCAAAGGCAGCTTGCGTATGGCGAATAAACAATACGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgatgtgcagccatcttaacggattccttacatttagcttcctggatgacagGTATATTTCATCTCCAAAGGCAGCTTGCGTATGGCGAATAAACAATACGCTACCGTAAAAAACGACTATGAAATGACGCTCAACAGCAATTCTGAAATTG
                           tccttac  putative branch site (score: 2)
                                        cttcct  putative PPT
                              ttacattta  TA-rich tract