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gtatgtgcggctaaaggtgcatgtcataacaaacaaagatgttttaattaagagttttacctcacttattaggtctggaatcccacccaggtttaatgctcctacttattccattgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCGGTTCCATTATACCTTCTGAAC
species | Physcomitrella patens |
transcript | PP1S237_29V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAG GAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCEST: gi|162171946|gb|FC348524.1|FC348524
genomic: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGC
EST: CTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAG GAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCEST: gi|162153244|gb|FC329026.1|FC329026
genomic: CTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGC
EST: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAG GAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCEST: gi|100416292|gb|BY975320.1|BY975320
genomic: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGC
EST: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAG GAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGEST: gi|100421034|gb|BY993579.1|BY993579
genomic: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGG
EST: CTCTNCT-GAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAA GAGTTTATAGATATGTGTGACTATGCCAGT-GGATTGAGTCGGCAGCTCANEST: gi|162180807|gb|FC358308.1|FC358308
genomic: CTCT-CTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGC-AGTTGGATTGAGTCGGCAGCTCAG
EST: ATCGGAGAAGTACAG GAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCEST: gi|162153739|gb|FC329142.1|FC329142
genomic: ATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGC
EST: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAG GAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGC
genomic: TCTCTCTTGAGATGGGCAAGATTTTGGCTGAAGGCATCGGAGAAGTACAGgtatgtgcgg ... tgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGC
taggtctggaatcccacccaggtttaatgctcctacttattccattgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCGGTTCCATTATACCTTCTGAAC
gtttaat putative branch site (score: 8)
ttccatt putative PPT
tacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcggctaaaggtgcatgtcataacaaacaaagatgttttaattaagagttttacctcacttattaggtctggaatcccacccaggtttaatgctcctacttattccattgctctgcagGAGTTTATAGATATGTGTGACTATGCAGTTGGATTGAGTCGGCAGCTCAGCGGTTCCATTATACCTTCTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA