1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagattgtcgtcttttgtactttgcagttcgtgaatggaggctaattgaccagctgaaatgaataaaagttgcttttgatcaaaagacctggtttcttgtaatgagttgttattgttttggatggtgatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGAAGGAAGGTGTACCTGAGGGATTATACATGTAGATTATTCAGTGCAGGT
species | Physcomitrella patens |
transcript | PP1S12_207V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|162233611|gb|FC409370.1|FC409370
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|67722661|gb|BJ972920.1|BJ972920
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|67721772|gb|BJ972031.1|BJ972031
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|208350798|gb|DC925929.1|DC925929
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|162179026|gb|FC356427.1|FC356427
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|208374231|gb|DC945277.1|DC945277
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|208372234|gb|DC948037.1|DC948037
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|208370715|gb|DC948252.1|DC948252
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|67723618|gb|BJ973877.1|BJ973877
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGEST: gi|208379248|gb|DC927259.1|DC927259
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
EST: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAG GTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
genomic: CCATTTGCACGGAGGCTGGTCTTCTTGCGTTGCGTGAGCGCCGGATGAAGgtaagattgt ... gatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAG
aaaagacctggtttcttgtaatgagttgttattgttttggatggtgatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGAAGGAAGGTGTACCTGAGGGATTATACATGTAGATTATTCAGTGCAGGT
ttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattgtcgtcttttgtactttgcagttcgtgaatggaggctaattgaccagctgaaatgaataaaagttgcttttgatcaaaagacctggtttcttgtaatgagttgttattgttttggatggtgatcttgcagGTGACTCAAGTTGATTTCAAGAAGGCCAAAGAGAAGGTAATGTATAAGAAGAAGGAAGGTGTACCTGAGGGATTATACATGTAGATTATTCAGTGCAGGT
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