1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaggagccccgctaccgtgcttgcgcttgtcttcaaatacaactgatctttcatgatttctcttattgatgatgatcactgtatgttgtgcattggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGGAGGATCTCGACAAGTTGAAGCGCGCAAGTGTAGACGGCGTGATGATAG
species | Physcomitrella patens |
transcript | PP1S9_318V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCG CTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGEST: gi|67576346|gb|BJ949170.1|BJ949170
genomic: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCGgtaggagccc ... ggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
EST: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCG CTGAGTACTATCAGCNATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGEST: gi|208349770|gb|DC905894.1|DC905894
genomic: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCGgtaggagccc ... ggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
EST: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCG CTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGEST: gi|162160287|gb|FC336573.1|FC336573
genomic: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCGgtaggagccc ... ggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
EST: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCG CTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGEST: gi|18332321|gb|BJ164334.1|BJ164334
genomic: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCGgtaggagccc ... ggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
EST: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCG CTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGEST: gi|67568989|gb|BJ941813.1|BJ941813
genomic: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCGgtaggagccc ... ggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
EST: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCG CTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
genomic: AGTGCCCAAGCCCTGTAACACCATACATTCCCACTTATGTTATGCTGCCGgtaggagccc ... ggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAG
ttcatgatttctcttattgatgatgatcactgtatgttgtgcattggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGGAGGATCTCGACAAGTTGAAGCGCGCAAGTGTAGACGGCGTGATGATAG
tattgat putative branch site (score: 3)
ttattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggagccccgctaccgtgcttgcgcttgtcttcaaatacaactgatctttcatgatttctcttattgatgatgatcactgtatgttgtgcattggctgtgtagCTGAGTACTATCAGCAATGAGAACAAGGTGGCTGATCCTGAGAAACTCAAGGAGGATCTCGACAAGTTGAAGCGCGCAAGTGTAGACGGCGTGATGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC