1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatggttctacccatcctgtggaacacatttgtaatttgttctcaacaatttgcaagtctaacttatcaccaatctgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAAGCATTCCTACTGGCAACCCTAATATAGGAGCAAGTTACAAATCTGAGA
species | Physcomitrella patens |
transcript | PP1S9_16V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|162170966|gb|FC346657.1|FC346657
genomic: GAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: ATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|7067293|gb|AW497148.1|AW497148
genomic: ATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|162183245|gb|FC360395.1|FC360395
genomic: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|162206596|gb|FC382354.1|FC382354
genomic: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|162231984|gb|FC409058.1|FC409058
genomic: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|18374583|gb|BJ206161.1|BJ206161
genomic: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|161979081|gb|EE296290.1|EE296290
genomic: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: AATTTCTCGAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATANGTGAAGCAGGCGTGGGAEST: gi|162222954|gb|FC399611.1|FC399611
genomic: AATTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: ATTTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|162245345|gb|FC423015.1|FC423015
genomic: A-TTTCTCAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: CAAGAACATTCCCAACGGTGGCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAEST: gi|162188462|gb|FC365060.1|FC365060
genomic: CAAGAACAATCCCAACGGTGGCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
EST: GCATCCATCACGTCTCATTTGCG GTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
genomic: GCATCCATCACGTCTCATTTGCGgtatggttct ... tgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGA
tgtaatttgttctcaacaatttgcaagtctaacttatcaccaatctgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAAGCATTCCTACTGGCAACCCTAATATAGGAGCAAGTTACAAATCTGAGA
gtctaac putative branch site (score: 2)
aacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttctacccatcctgtggaacacatttgtaatttgttctcaacaatttgcaagtctaacttatcaccaatctgtatttcagGTCGATAATATCAACTCAGCAGCATGCTACATAGGTGAAGCAGGCGTGGGAAGCATTCCTACTGGCAACCCTAATATAGGAGCAAGTTACAAATCTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG