1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttcgaattcaattactttttcctcatggctccttcagattccttcgggttggttctatgtgaatagcccctggatcgagatattgtttgtttgagctacccgcagttgaatcttacttgtttgtgcgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGGAGCACCTTATCAAGTAGGGTCTGGGCAAGCAGTGCCTAATTTCGCCAA
species | Physcomitrella patens |
transcript | PP1S79_2V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAAC-ACATTGCGAAACGGEST: gi|22491715|gb|BU051638.1|BU051638
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGEST: gi|100446638|gb|CJ970937.1|CJ970937
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGEST: gi|100356888|gb|BY965329.1|BY965329
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGEST: gi|162197741|gb|FC374991.1|FC374991
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAAACG-TGGTGTACCTEST: gi|100400044|gb|BY990750.1|BY990750
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAA-CGGTGGTGTACCT
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCCGEST: gi|162205973|gb|FC382758.1|FC382758
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGEST: gi|162228527|gb|FC404450.1|FC404450
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGEST: gi|67576432|gb|BJ949256.1|BJ949256
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAA GGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGEST: gi|18355136|gb|BJ187195.1|BJ187195
genomic: TTTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTG
EST: TTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCCCATGGGTGGTCTGCCNA GGCCAATGATAG
genomic: TTGCGTTTACCGGAAGAAGTTTTGAGCAGCCCC-ATGGGTGGTCTGCTAAgtaagttcga ... cgcatggcagGGCCAATGATAG
tattgtttgtttgagctacccgcagttgaatcttacttgtttgtgcgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGGAGCACCTTATCAAGTAGGGTCTGGGCAAGCAGTGCCTAATTTCGCCAA
atcttac putative branch site (score: 3)
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgaattcaattactttttcctcatggctccttcagattccttcgggttggttctatgtgaatagcccctggatcgagatattgtttgtttgagctacccgcagttgaatcttacttgtttgtgcgcatggcagGGCCAATGATAGAAAATCTGGAAACCACATTGCGAAACGGTGGTGTACCTGGAGCACCTTATCAAGTAGGGTCTGGGCAAGCAGTGCCTAATTTCGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA