1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgtactatgtctcatttttgacttgttctgtgatgtggattcttaagtgaatgtacaaatgaattaggctaactcggttttcttgctttttagtaattttttttatttctcatgaattcatttgccgctgaaatcttgatttcttttcaacgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAAGAAAGGAAGAGGACGGAGACAATGAATTTATGGATTCTATAGTTAGTT
species | Physcomitrella patens |
transcript | PP1S79_221V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAEST: gi|162266195|gb|FC441932.1|FC441932
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAEST: gi|162224605|gb|FC400501.1|FC400501
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAEST: gi|67573415|gb|BJ946239.1|BJ946239
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAEST: gi|67696796|gb|BJ957029.1|BJ957029
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAEST: gi|18328787|gb|BJ160792.1|BJ160792
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAEST: gi|162266209|gb|FC441933.1|FC441933
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
EST: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG CTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
genomic: GGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATGgtgtgtacta ... acgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAA
atttctcatgaattcatttgccgctgaaatcttgatttcttttcaacgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAAGAAAGGAAGAGGACGGAGACAATGAATTTATGGATTCTATAGTTAGTT
tcttgat putative branch site (score: 3)
aattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtactatgtctcatttttgacttgttctgtgatgtggattcttaagtgaatgtacaaatgaattaggctaactcggttttcttgctttttagtaattttttttatttctcatgaattcatttgccgctgaaatcttgatttcttttcaacgatggcagCTGAGGTCCCGGAAGACTTGCCCAAGGAGCTAGTAGCGCCGCCACCGTCAAAGAAAGGAAGAGGACGGAGACAATGAATTTATGGATTCTATAGTTAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA