1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgtatcctattgacagtgggagaatgaaattaaatgcattttcctcgtttttaatgcctgtaatttgatgaaggagaaggtttgaatgtctctgaaagctgcagtagaatgaaatagcggcagctggtttgctgcaaacaacaaggtcggtggaaactgagcatgctctgaaccctttatatcctcctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGTGAGCGTTGCTGATGCGTCTGGCTTCTTAGGATTGTCGGAGAACGAAAC
species | Physcomitrella patens |
transcript | PP1S79_113V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|37853057|gb|BJ611065.1|BJ611065
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|18367047|gb|BJ199127.1|BJ199127
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|37848842|gb|BJ606850.1|BJ606850
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162273380|gb|FC449829.1|FC449829
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|18359647|gb|BJ191708.1|BJ191708
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: GGTTTTGATTGGAGCGAACAAGTGCAACCCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCAEST: gi|162244698|gb|FC424626.1|FC424626
genomic: GGTTTTGATTGGAGCGAACAAGTGCAACC-GGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCA
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|37847458|gb|BJ605466.1|BJ605466
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162149649|gb|FC325842.1|FC325842
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162225441|gb|FC401206.1|FC401206
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|18372643|gb|BJ204245.1|BJ204245
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCEST: gi|19790267|gb|BQ041782.1|BQ041782
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCC
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|208368458|gb|DC939935.1|DC939935
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|208372693|gb|DC952580.1|DC952580
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162149648|gb|FC325841.1|FC325841
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162225442|gb|FC401207.1|FC401207
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162206796|gb|FC382658.1|FC382658
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162273381|gb|FC449830.1|FC449830
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|37852160|gb|BJ610168.1|BJ610168
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|37822846|gb|BJ580912.1|BJ580912
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162244699|gb|FC424627.1|FC424627
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|162206797|gb|FC382659.1|FC382659
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|18366439|gb|BJ198518.1|BJ198518
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGEST: gi|37846817|gb|BJ604825.1|BJ604825
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
EST: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCA ATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
genomic: AGGTTTTGATTGGAGCGAACAAGTGCAACCGGTTGCTACTGCAATTAGCAgtacgtatcc ... cctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTG
acaaggtcggtggaaactgagcatgctctgaaccctttatatcctcctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGTGAGCGTTGCTGATGCGTCTGGCTTCTTAGGATTGTCGGAGAACGAAAC
ccctttatatcctcct CT-rich tract
tttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatcctattgacagtgggagaatgaaattaaatgcattttcctcgtttttaatgcctgtaatttgatgaaggagaaggtttgaatgtctctgaaagctgcagtagaatgaaatagcggcagctggtttgctgcaaacaacaaggtcggtggaaactgagcatgctctgaaccctttatatcctcctgtgacagATGACTACTCCTCCTGTATGCTGAGATTACTTTCCACCGCCTACTCCACTGTGAGCGTTGCTGATGCGTCTGGCTTCTTAGGATTGTCGGAGAACGAAAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA