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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaagatttgatatttgtctctttacgctgtagttacttgctgtacgcttatacgtttgaacttacatatttgtctggatgtttgcgggaataattcagGTCCACCACTTTGGATACTTGGAACCAGGATCAATTGAAGTTAATGAGCTTGGGTGGCAATGGCCGAGCACATGTGTTCTTTAAACAGCACGGTTGGACT

Basic information

species Physcomitrella patens
transcript PP1S795_4V6.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67574773|gb|BJ947597.1|BJ947597
EST:     GACTGTTCAGCTCTACATCGTAGTCTCGGTGTCCACATTAGTTTTGTCAG                         GTCCACCACTTTGGATACTTGGAACCAGGATCAATTGAAGTTAATGAGCTT
genomic: GACTGTTCAGCTCTACATCGTAGTCTCGGTGTCCACATTAGTTTTGTCAGgtgattttcg ... aataattcagGTCCACCACTTTGGATACTTGGAACCAGGATCAATTGAAGTTAATGAGCTT
EST: gi|208387277|gb|DC933028.1|DC933028
EST:     GACTGTTCAGCTCTACATCGTAGTCTCGGTGTCCACATTAGTTTTGTCAG                         GTCCACCACTTTGGATACTTGGAACCAGGATCAATTGAAGTTAATGAGCTT
genomic: GACTGTTCAGCTCTACATCGTAGTCTCGGTGTCCACATTAGTTTTGTCAGgtgattttcg ... aataattcagGTCCACCACTTTGGATACTTGGAACCAGGATCAATTGAAGTTAATGAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcttatacgtttgaacttacatatttgtctggatgtttgcgggaataattcagGTCCACCACTTTGGATACTTGGAACCAGGATCAATTGAAGTTAATGAGCTTGGGTGGCAATGGCCGAGCACATGTGTTCTTTAAACAGCACGGTTGGACT
               aacttac  putative branch site (score: 2)
                  ttacatattt  TA-rich tract