1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtccccacacagactacaattacatgatgatagactcagcaattctagatgttgtttcttcgttctcatattgggaggtatacatgtgatgtgatgtaatgttttgtgtgtttgaattttctgctgtatgcttccctatcgtcccttaaacagtgattcctcttattgatacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTACGAGCTTTACAGATTCTGGGACAATTGATAAGTCCACAGTGCAGTCCCAC
species | Physcomitrella patens |
transcript | PP1S78_8V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAG ATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTACEST: gi|100397974|gb|BY954025.1|BY954025
genomic: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAGgtgtccccac ... atacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTAC
EST: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAG ATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTACEST: gi|208390790|gb|DC938383.1|DC938383
genomic: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAGgtgtccccac ... atacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTAC
EST: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAG ATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTACEST: gi|208373870|gb|DC956344.1|DC956344
genomic: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAGgtgtccccac ... atacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTAC
EST: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAG ATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTAC
genomic: TGGACCTCACTGCAATATATTCCCGGTCTTTACATATCTTTTTACCACAGgtgtccccac ... atacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTAC
ctgtatgcttccctatcgtcccttaaacagtgattcctcttattgatacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTACGAGCTTTACAGATTCTGGGACAATTGATAAGTCCACAGTGCAGTCCCAC
tattgat putative branch site (score: 4)
ttattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtccccacacagactacaattacatgatgatagactcagcaattctagatgttgtttcttcgttctcatattgggaggtatacatgtgatgtgatgtaatgttttgtgtgtttgaattttctgctgtatgcttccctatcgtcccttaaacagtgattcctcttattgatacttgcagATATACAGGTCCAGTTGCTGCGTGTTTTGGTCTTTGCTTGTTCCTTCTTACGAGCTTTACAGATTCTGGGACAATTGATAAGTCCACAGTGCAGTCCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT