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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC

Basic information

species Physcomitrella patens
transcript PP1S74_193V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g54870.1 (Oryza sativa), 3'ss of exon 3
ccgttctcagtg-tatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtc-gttgaatatgaatctgaccagacgtt---cctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
     | || || | ||   |     |   |   ||   |  |   ||||| |||     |||| ||       |||  | |       |  |||    |||||||||||||||||| |||| || ||||||||||||||||| |||||| ||||||| |||||| |||| || ||||||||||||||||||||||| |||||  
-----cacaatgatttaaattggctgagttagttcacgcttagtttattatcagctttttcaatagtttacctgataatatttccttttgttgttttatctgcagATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGTAGGACTGGCTACCACAACATGTACAAGGAGTACCGTGATA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g47660.1 (Oryza sativa), 3'ss of exon 3
-ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
    |   || |  ||      ||    | |     || ||      ||  | | | | |  | | || ||   ||    ||  |      |      ||||| || |||    |||| ||||| |||||||||||||| |||||| ||||||| |||||  | ||||| ||||||||||||||||||||||| |||||| 
tttttgaacactagatcacactttacttctagtatgatttcacatttttgcatggatataatactttc-ttctctacccctcacaatttctgccatgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGCAGAACCGGTTACCACAACATGTACAAGGAGTACCGTGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os05g49030.1 (Oryza sativa), 3'ss of exon 3
----------ccgttctcagtgtatacgctcttgaaac-catcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
           | | || || || ||   |  |   ||  |||     || |   | ||| || ||| | |||   |   | || ||   |||||    |  |     ||||| ||||||    ||||||| || ||||||||||| || |||||| ||||||| |||||  | || || |||||||||||||||||||| || |||||| 
gaaaagattggcttgctaagagtctagtgtgatactacatatcttggagttgaatagtta-aaacagtg-caaccctt-ctaaacat---tctgattgtatct-----cagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGTTACCAGAGCAGAACAGGTTACCACAACATGTACAAGGAATACCGTGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G113720_T02 (Zea mays), 3'ss of exon 2
ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcaga--gacaattgtcgttgaatatg--aatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
  |      | |  | |  ||   ||  ||            ||  || |          |||  |     |||   |   ||        || ||| || ||||| ||||||    |||| ||||| |||||||||||||| |||||| |||| || |||||  |||| || ||||||||||||||||||||||| || ||| 
--gaggatgg-gcttgcaatcccaaagtcacttgttcacttagatgttttgtttttctccacatctacttctgagcttcataacacatttcgatgtttct-cagATCTTTGAGCGCAACCCGACCACCATCAAGAACTATGGCATCTGGCTGCGCTACCAGAGCAGGACTGGTTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
--ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgg--gaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
  | |  ||    |   | |   ||| ||   |||||| |||    |   |  ||||         |   | |    |    | ||| |  || ||| || ||||| || |||    |||| ||||| ||||||||||| || |||||| |||| || |||||  |||| |||||||||||||||||||||||||| || ||| 
gccagagctggtcgaggatggctttgcaa---tcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttct-cagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
ccgttctcagtgtatacgc-tcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccag-acgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
   | |      | | |   || |    |  | ||  | |  |       |    |||  || ||||  |   ||  | |   |  | | | | |    ||||| ||||||    |||| || || ||||||||||| || |||||| |||| || |||||  | ||||| ||||||||||||||||||||||| || ||| 
--atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgcaagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AC230013.2_FGT007 (Zea mays), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaacc--atcccaatgtcgggaaattataagcagagacaat------tgtcgttgaatatgaatctgaccag-acgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
            |  | | |   ||  ||   |||      | | |  |||| |   || | |||      ||| ||   || ||     | || | | | |   |||||| || |||    |||| || || ||||||||||| || |||||| |||| || |||||  | ||||| ||||||||||||||||||||||| || ||| 
---------agatgaatgatggcgatcccttgtccttgcagctgaatcttattactcgaaagaatcctttgtgttgtgtcatttgctaaagtcctgtatgatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 3
ccgttctcagtgtatacgct-cttgaaaccatcccaatgtcgggaaattataagcag--agacaattgtcgttgaata--tgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
     ||   | |      |  || ||  ||     |  |       |  |   | |   |  |||||| | ||      |   |   |  |     |  | ||||||||||||||| |||| ||||  || |||||||||||||| ||| |||| ||||||||| |||| || ||||||||||||||||||||||| |||||| 
-----ctggatttgcggattatttcaactcagtttgaaatacaatgttagttttctgttggctaattgtgggtgctctgttctgttgaattattttattttccagATTTTTGAGAAGAACCCAACCAAAATTAAGAACTATGGTATATGGTTGCGGTATCAGAGTAGGACTGGTTACCACAACATGTACAAGGAGTACCGTGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataa--gcagagacaattgtcgttgaatatgaa--tctgaccagacgttc---ctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
      | ||   | |    ||||||   ||     | |    |  ||  ||  || |    | | | |  || | ||| |  | |||      || |    ||||||||||||||||| | |||||||  || ||||| ||||| || ||| ||||||||||||| || || || || ||||| ||||||||||| || || ||  
------ttaggaaagaaatacttgaacaaatatttgtatttt-agcttccaattgctgtcttattggacaatggacatggaggtttgagtttttgtactgattgcagATTTTTGAGAAGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGTTATCAGAGCCGCACTGGTTATCACAATATGTACAAGGAATACCGAGATA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA02G45430.1 (Glycine max), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaaccatcccaatgt-cgggaaattataagcagagacaattgtcgttgaatatgaa--tctgaccagacgttc---ctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
      | ||   | |    || |||   ||     | | |  |     |   ||||    | | | |  |||| ||| |  | |||      || |    ||||||||||||||| | | |||||||  || ||||| ||||| || ||| |||| ||||||||||| || ||||| ||||| ||||||||||| || || ||  
------ttaggaaagaaatactagaacaaatatttgtattctaggttccaattgcagtcttattggacaatgaacatggaggtttgattttttgtgctgattgcagATTTTTGAGAGGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGGTATCAGAGTCGTACTGGGTATCACAATATGTACAAGGAATACCGAGATA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA18G13270.1 (Glycine max), 3'ss of exon 3
---ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttga-atatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC-
     || |   | |   |   | ||       |   |   || | |  || || ||    |     | |  |||  ||| | |||    |  | ||  || |||||||||||||  | |||||||  |||||||| ||||| || ||| |||| |||||||| || || || || ||||||||||||||||| ||||| ||   
taggagtacctggagacgatttttttcccctgtttttagcttcagca--ttctaggctccaattgcagacagtgatgtataattct--ttatgc-ttattgtagaTTTTTGAGAAAAATCCTACCAAGATCAAGAATTATGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATATCGCGATAC

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaac-catcccaatgtcgggaaattataagcagagacaattgtcgttga-atatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
   |    ||  | ||   |  |       ||  ||   || |   |  | ||   |    | ||  | |    || |  | || || | | ||  |||||||||||||||||| |||| ||||| |||||||||||||| || ||| |||| ||||| ||||| || || || ||||||||||||||||| || |||||| 
-aatgtcaagcttgtattttaatatgttgtattgcaccttctgattaaaaaaaaatgtcgtatttcccctcattatgtttagct-actacatgtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGGTATCAAAGTCGAACTGGTTATCACAACATGTACAAGGAATACCGTGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 3
---ccgttctcagtgtatacgctct-tgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
      ||||   |  ||| ||| | |    || ||  | |||   |     | || |   |   |||| | || | ||||  | |  |   | ||  |||||||||||||||||| |||| ||||| |||||||| ||||| || ||| |||| ||||| ||||| || || || ||||||||||||||||| || |||||| 
tcaagcttctacttcaatatgctgtattggcccttctgattgtaaagggggaaaaaactttgt--attgcccttcattatg--tttagctgcatgtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGGTATCAAAGTCGAACTGGTTATCACAACATGTACAAGGAATACCGTGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv19s0135g00100.t01 (Vitis vinifera), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgt-cgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
  ||  |    | |   | |||| |  |    |   |  |   |  |  |   |    ||  || |   ||   | |     | |       |  |||||||||||||||||| | || ||||  || || |||||||| || ||| |||| |||||||| || || || || ||||||||||||||||| ||||| ||| 
-tgtctttttagaaccagatcttaagccatatctcttacctaaatgtctttttccttaacttttttattttttttttctgagtaattctcattaactgcagATTTTTGAGAAGAATCCCACCAAGATAAAAAACTATGGAATTTGGTTGCGATATCAGAGCCGAACTGGATATCACAACATGTACAAGGAATATCGGGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ38689 (Selaginella moellendorffii), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
           ||| |     ||       |  |  |    |    ||| |||     ||             | || | ||  |  |||       |||||||| |||||| |||| ||||| |||||||||||||| ||||||||| | || ||||| ||||| |||||||||||||||||||||||||| || ||| 
-----------gtaaagttctttctttttctttcttttctcgagccttacaagtgagaac-------------tttggaactt-cgtgaca------cagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ31458 (Selaginella moellendorffii), 3'ss of exon 3
ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgt-tgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
                      | ||    |  |  | ||      |  |     ||  |  | | | |   | |  |||  |    |     |    |||||||| |||||| |||| ||||| |||||||||||||| ||||||||| | || ||||| ||||| |||||||||||||||||||||||||| || ||| 
---------------------gtaaagttctttctttttctt----tctttcctcgatgctctagccttacaagtgagaactttggaacttcgtgacacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67703710|gb|BJ963943.1|BJ963943
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|6167489|gb|AW145753.1|AW145753
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGTTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162271402|gb|FC446975.1|FC446975
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162200201|gb|FC376073.1|FC376073
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162271855|gb|FC448065.1|FC448065
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162271391|gb|FC446964.1|FC446964
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|19780240|gb|BQ039536.1|BQ039536
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162259564|gb|FC435491.1|FC435491
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162202521|gb|FC379230.1|FC379230
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|18374398|gb|BJ205976.1|BJ205976
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162209172|gb|FC385391.1|FC385391
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|22132063|gb|BQ826960.1|BQ826960
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67703073|gb|BJ963306.1|BJ963306
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7046860|gb|AW476804.1|AW476804
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162274917|gb|FC450568.1|FC450568
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7583665|gb|AW699572.1|AW699572
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162232758|gb|FC408165.1|FC408165
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67571641|gb|BJ944465.1|BJ944465
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162277946|gb|FC454077.1|FC454077
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67704300|gb|BJ964533.1|BJ964533
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7207297|gb|AW561300.1|AW561300
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|37835110|gb|BJ593122.1|BJ593122
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67718617|gb|BJ968876.1|BJ968876
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|18349284|gb|BJ181333.1|BJ181333
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162271390|gb|FC446963.1|FC446963
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162274918|gb|FC450569.1|FC450569
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7067480|gb|AW497335.1|AW497335
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|18373037|gb|BJ204639.1|BJ204639
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162238997|gb|FC418463.1|FC418463
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162263801|gb|FC439666.1|FC439666
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162253736|gb|FC429850.1|FC429850
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|18353639|gb|BJ185694.1|BJ185694
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7147631|gb|AW509553.1|AW509553
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162213097|gb|FC389521.1|FC389521
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162270105|gb|FC446805.1|FC446805
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162236236|gb|FC412005.1|FC412005
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7207705|gb|AW561702.1|AW561702
EST:     AGTTGCAGAAAGTCAAGAATGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAAAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162270106|gb|FC446806.1|FC446806
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162213098|gb|FC389522.1|FC389522
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162271854|gb|FC448064.1|FC448064
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162202522|gb|FC379231.1|FC379231
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|19788446|gb|BQ040769.1|BQ040769
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162256148|gb|FC432433.1|FC432433
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162253737|gb|FC429851.1|FC429851
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162256147|gb|FC432432.1|FC432432
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|37844966|gb|BJ602974.1|BJ602974
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162212767|gb|FC388567.1|FC388567
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7047339|gb|AW477233.1|AW477233
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|37843558|gb|BJ601566.1|BJ601566
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7147623|gb|AW509545.1|AW509545
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|18369517|gb|BJ201604.1|BJ201604
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|7287437|gb|AW599924.1|AW599924
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162200202|gb|FC376074.1|FC376074
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67727870|gb|BJ978129.1|BJ978129
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67719603|gb|BJ969862.1|BJ969862
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162275357|gb|FC451541.1|FC451541
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|19790887|gb|BQ042110.1|BQ042110
EST:     AGCTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162263802|gb|FC439667.1|FC439667
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|67727046|gb|BJ977305.1|BJ977305
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|37828224|gb|BJ586236.1|BJ586236
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|162259565|gb|FC435492.1|FC435492
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|22492309|gb|BU052232.1|BU052232
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGT
EST: gi|6102312|gb|AW126782.1|AW126782
EST:     AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAG                         ATTTTTGAAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGNTGC
genomic: AGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGA-GAAGTACCCTACCACTATCAAGAACTATGGTATCTGGG-TGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 138

GTATTTCCTCAGGAAGTTGCAGAAAGTCAAGAAGGCCCACGGTCAACTTCTCGCTATCAACGAGgtatgtcaac ... gttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC
                                 atctgac  putative branch site (score: 138)
                                            cgttcct  putative PPT
                          aatatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgggaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG