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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagctttgtgtcttttttgttgttctatatgtctatcttaccaacacttctagttactcgtgggtaagtcagaagtagtctgataaccttcttgttgcagCGATTGAGATTGATAGAAGTGTACGACGTGCAACGCTTGCACATGCGCTACGCTACTTCGTCAATCGG

Basic information

species Physcomitrella patens
transcript PP1S58_197V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100411979|gb|BY956357.1|BY956357
EST:     TCAACTTTCCTGAGCATGGTTTTCATCTGCGGTTTGAATCTCAGTCGCAG                         CGATTGAGGTTGATAGAAGTGTACGACGTGCAACGCTTGCACATGCGCTAC
genomic: TCAACTTTCCTGAGCATGGTTTTCATCTGCGGTTTGAATCTCAGTCGCAGgtatccatgc ... cttgttgcagCGATTGAGATTGATAGAAGTGTACGACGTGCAACGCTTGCACATGCGCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctagttactcgtgggtaagtcagaagtagtctgataaccttcttgttgcagCGATTGAGATTGATAGAAGTGTACGACGTGCAACGCTTGCACATGCGCTACGCTACTTCGTCAATCGG
                                   tgataac  putative branch site (score: 2)
                                         ccttcttgtt  CT-rich tract