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...atttgcttgttcgacaggacccaaaattgaattttagtcttgcatgtcgataatgtacgaggtaatcttgacgctcttagaatgggtttggcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACTCTGAGTCTGTTTAGCAGTAAGAAACAGTTGAAGACGGGCAAGCAGAAGT
species | Physcomitrella patens |
transcript | PP1S58_188V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACTEST: gi|208398913|gb|DC912072.1|DC912072
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
EST: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACTEST: gi|18373745|gb|BJ205323.1|BJ205323
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
EST: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACTEST: gi|18362650|gb|BJ194721.1|BJ194721
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
EST: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG GTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
genomic: TCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACGgtgggttatt ... gcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACT
gtcgataatgtacgaggtaatcttgacgctcttagaatgggtttggcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACTCTGAGTCTGTTTAGCAGTAAGAAACAGTTGAAGACGGGCAAGCAGAAGT
tcttgac putative branch site (score: 3)
taatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgcttgttcgacaggacccaaaattgaattttagtcttgcatgtcgataatgtacgaggtaatcttgacgctcttagaatgggtttggcttgcacagGTGTGGGATGTCTCGTCACCGAGGCAAGAAGTAGTTGTAGGTGGTGCTACTCTGAGTCTGTTTAGCAGTAAGAAACAGTTGAAGACGGGCAAGCAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT