1 5' 3' | 2 5' 3' | 3 5' 3' |
...agatacattgtttgagggcgaaattatgttaacaatgttaatcatgggcttgaaagtgacgttacgaattctattactaatgtagtttttgaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGCCGGACTGGCTACCACAACATGTACAAGGAGTACCGTGACC
species | Physcomitrella patens |
transcript | PP1S56_243V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|162235022|gb|FC411809.1|FC411809
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37838414|gb|BJ596422.1|BJ596422
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|67719554|gb|BJ969813.1|BJ969813
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|18367074|gb|BJ199154.1|BJ199154
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|18333851|gb|BJ165867.1|BJ165867
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: CTGCAGAAGGTGAAGAAGGCTCACGGGCCAACTCCTTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|208353060|gb|DC926083.1|DC926083
genomic: CTGCAGAAGGTGAAGAAGGCTCAC-GGCCAACTCC-TTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|162206290|gb|FC382568.1|FC382568
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|18372508|gb|BJ204110.1|BJ204110
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|162260389|gb|FC436068.1|FC436068
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|67726640|gb|BJ976899.1|BJ976899
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37852027|gb|BJ610035.1|BJ610035
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|208398326|gb|DC912311.1|DC912311
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37825472|gb|BJ583538.1|BJ583538
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|19780393|gb|BQ039555.1|BQ039555
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|208375525|gb|DC940523.1|DC940523
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|162270822|gb|FC446851.1|FC446851
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|19790807|gb|BQ042066.1|BQ042066
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37847485|gb|BJ605493.1|BJ605493
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|67727824|gb|BJ978083.1|BJ978083
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|208391446|gb|DC937594.1|DC937594
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAGGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|67718152|gb|BJ968411.1|BJ968411
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|208394496|gb|DC953535.1|DC953535
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|18325024|gb|BJ157020.1|BJ157020
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|18366391|gb|BJ198470.1|BJ198470
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37846767|gb|BJ604775.1|BJ604775
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|208364358|gb|DC950659.1|DC950659
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAGGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|7067340|gb|AW497195.1|AW497195
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|18360441|gb|BJ192503.1|BJ192503
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37825253|gb|BJ583319.1|BJ583319
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|37822224|gb|BJ580290.1|BJ580290
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTEST: gi|162264738|gb|FC440305.1|FC440305
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
EST: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAG ATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
genomic: AGCTGCAGAAGGTGAAGAAGGCTCACGGCCAACTCCTTGCTATCAATGAGgtatgtgtgg ... gaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGT
gggcttgaaagtgacgttacgaattctattactaatgtagtttttgaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGCCGGACTGGCTACCACAACATGTACAAGGAGTACCGTGACC
tactaat putative branch site (score: 1)
ccttc putative PPT
aattctattactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatacattgtttgagggcgaaattatgttaacaatgttaatcatgggcttgaaagtgacgttacgaattctattactaatgtagtttttgaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGCCGGACTGGCTACCACAACATGTACAAGGAGTACCGTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG