1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacttaacacgtttacatgggatttttcatcttgcttgtatcgagtcccgctacgcgttaaatgatgaactagaatggaaccgcatttgaggaggtgatcggttcccagttgagtcgttcattgaggtagatgtgtgatatactcttggtgagcattattactttttcatttcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACCATAGACGCAAGAACCGATGCTTGGAGAGTCTTCAAGAAAACGTTAACC
species | Physcomitrella patens |
transcript | PP1S47_277V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|208380153|gb|DC927432.1|DC927432
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67698997|gb|BJ959230.1|BJ959230
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|208396407|gb|DC920073.1|DC920073
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|162258306|gb|FC434233.1|FC434233
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|162192959|gb|FC371942.1|FC371942
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCCGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGTTGTCGACEST: gi|100374751|gb|BY949051.1|BY949051
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67575524|gb|BJ948348.1|BJ948348
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCCATCGGTATTTGCTGTCGEST: gi|18369192|gb|BJ201277.1|BJ201277
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACC-ATCGGTATT-GCTGTCG
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTANAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|37845862|gb|BJ603870.1|BJ603870
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|162228814|gb|FC404685.1|FC404685
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTTTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67717319|gb|BJ967578.1|BJ967578
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|22133342|gb|BQ827686.1|BQ827686
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|208352405|gb|DC906188.1|DC906188
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|37851577|gb|BJ609585.1|BJ609585
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|162228815|gb|FC404686.1|FC404686
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|208349966|gb|DC913674.1|DC913674
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|162237413|gb|FC412716.1|FC412716
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|18353103|gb|BJ185158.1|BJ185158
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67572247|gb|BJ945071.1|BJ945071
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|18358961|gb|BJ191021.1|BJ191021
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|162237414|gb|FC412717.1|FC412717
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67575789|gb|BJ948613.1|BJ948613
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|37850492|gb|BJ608500.1|BJ608500
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|37850237|gb|BJ608245.1|BJ608245
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|18371408|gb|BJ203010.1|BJ203010
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|18368948|gb|BJ201033.1|BJ201033
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67575451|gb|BJ948275.1|BJ948275
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|37828765|gb|BJ586777.1|BJ586777
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67725836|gb|BJ976095.1|BJ976095
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|18361266|gb|BJ193331.1|BJ193331
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67698918|gb|BJ959151.1|BJ959151
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACEST: gi|67695614|gb|BJ955847.1|BJ955847
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
EST: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAG GCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
genomic: ACAATGCTAAGATCCGTGCTGGACGCGGCTTCACTCTAGAGGAGTTGAAGgtacttaaca ... tcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGAC
gtagatgtgtgatatactcttggtgagcattattactttttcatttcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACCATAGACGCAAGAACCGATGCTTGGAGAGTCTTCAAGAAAACGTTAACC
ttactttttcatttc CT-rich tract
attattactttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaacacgtttacatgggatttttcatcttgcttgtatcgagtcccgctacgcgttaaatgatgaactagaatggaaccgcatttgaggaggtgatcggttcccagttgagtcgttcattgaggtagatgtgtgatatactcttggtgagcattattactttttcatttcggctgtagGCTGCAGGAGTTCCCAAGAAGCTTGCACCTACCATCGGTATTGCTGTCGACCATAGACGCAAGAACCGATGCTTGGAGAGTCTTCAAGAAAACGTTAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA