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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacattggtgagttagccagatttgaagcttagccgttttgatctcctgattccaataatgtaccactctaatgtgttctttgtattttataacatgtagTTGCGGCAAGCGAAAGTGGAGGTGATGTCAGTAACCAAGAATGCCATGCGTTTTATGTTTGGATCTGGTTCACCATCTTCAGAGTCTCCCAATAGTAATT

Basic information

species Physcomitrella patens
transcript PP1S411_22V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100371301|gb|BY986036.1|BY986036
EST:     CAAATGCTGGTGATGCTGCAATTGAAGTTGCCGAGAAAACTATGGGAGGG                         TTGCGGCAAGCGAAAGTGGAGGTGATGTCAGTAACCAAGAATGCCATGCGT
genomic: CAAATGCTGGTGATGCTGCAATTGAAGTTGCCGAGAAAACTATGGAAGGGgtatgactct ... taacatgtagTTGCGGCAAGCGAAAGTGGAGGTGATGTCAGTAACCAAGAATGCCATGCGT
EST: gi|162168770|gb|FC344760.1|FC344760
EST:     CAAATGCTGGTGATGCTGCAATTGAAGTTGCCGAGAAAACTATGGAAGGG                         TTGCGGCAAGCGAAAGTGGAGGTGATGTCAGTAACCAAGAATGCCATGCGT
genomic: CAAATGCTGGTGATGCTGCAATTGAAGTTGCCGAGAAAACTATGGAAGGGgtatgactct ... taacatgtagTTGCGGCAAGCGAAAGTGGAGGTGATGTCAGTAACCAAGAATGCCATGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgattccaataatgtaccactctaatgtgttctttgtattttataacatgtagTTGCGGCAAGCGAAAGTGGAGGTGATGTCAGTAACCAAGAATGCCATGCGTTTTATGTTTGGATCTGGTTCACCATCTTCAGAGTCTCCCAATAGTAATT
                                          ttataac  putative branch site (score: 2)
                               ttctttgtattttata  TA-rich tract