1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtaaattcattggcatcttgtattcatattttattccttttttcgtttatcttcttagagttcaaagaacagataacgcatattttaccaattcaaggctcggataaagtgcatgtcgttgctaaaattttgagcattgttctcggccaccgctctgaccttctagtcttcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACATAAACGGGAACGGCGGCTTGCTCGAGAGGATGGCTACAGTTGATGTTG
species | Physcomitrella patens |
transcript | PP1S3_96V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162215135|gb|FC390760.1|FC390760
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162219753|gb|FC395957.1|FC395957
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162265473|gb|FC440799.1|FC440799
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162239163|gb|FC416263.1|FC416263
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|7067513|gb|AW497368.1|AW497368
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|37847318|gb|BJ605326.1|BJ605326
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|37841761|gb|BJ599769.1|BJ599769
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162193871|gb|FC368733.1|FC368733
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162196438|gb|FC375430.1|FC375430
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGEST: gi|162197017|gb|FC375229.1|FC375229
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTG
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|18335025|gb|BJ167043.1|BJ167043
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|100416688|gb|BY993038.1|BY993038
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162239162|gb|FC416262.1|FC416262
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162219754|gb|FC395958.1|FC395958
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162193872|gb|FC368734.1|FC368734
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGEST: gi|162269779|gb|FC444932.1|FC444932
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTG
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|37824254|gb|BJ582320.1|BJ582320
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|37839889|gb|BJ597897.1|BJ597897
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162206181|gb|FC382251.1|FC382251
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: CGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|7067026|gb|AW496881.1|AW496881
genomic: CGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162160000|gb|FC335662.1|FC335662
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACEST: gi|162197016|gb|FC375228.1|FC375228
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
EST: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAG CTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
genomic: AGCTTCCTCCTCACCAGTGGGATCAGTGGTCGAAGCCCTATATTCAGCAGgtgtaaattc ... tcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTAC
aaattttgagcattgttctcggccaccgctctgaccttctagtcttcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACATAAACGGGAACGGCGGCTTGCTCGAGAGGATGGCTACAGTTGATGTTG
ccttctagtcttcttt CT-rich tract
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaaattcattggcatcttgtattcatattttattccttttttcgtttatcttcttagagttcaaagaacagataacgcatattttaccaattcaaggctcggataaagtgcatgtcgttgctaaaattttgagcattgttctcggccaccgctctgaccttctagtcttcttttccagCTTGTGGCCAAGGTGAGAGACGCTTGCCCGGGGGTACCATTGGTGATGTACATAAACGGGAACGGCGGCTTGCTCGAGAGGATGGCTACAGTTGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG