1 5' 3' | 2 5' 3' | 3 5' 3' |
...cattccaatttccttgcacgtggatttgcttccaccattattttgtctggtataccataccgctgctggctgtgttcatagtctttgtgcttgtattcagGTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAGGAATTACAGGAGGAAAAGAATGAAGTTCTCGCTAAAATGGCTGCTTTGA
species | Physcomitrella patens |
transcript | PP1S341_64V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACTGCGATACCTGATTGGCGAGGTGTTTACCCACCTGCCAGTTGAAGAG GTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAGEST: gi|162249630|gb|FC426796.1|FC426796
genomic: AACTGCGATACCTGATTGGCGAGGTGTTTACCCACCTGCCAGTTGAAGAGgtatccgttt ... ttgtattcagGTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAG
EST: AACTGCGATACCTGATTGGCGAGGTGTTTACCCACCTGCCAGTTGAAGAG GTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAGEST: gi|37845138|gb|BJ603146.1|BJ603146
genomic: AACTGCGATACCTGATTGGCGAGGTGTTTACCCACCTGCCAGTTGAAGAGgtatccgttt ... ttgtattcagGTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAG
EST: AACTGCGATACCTGATTGGCGAGGTGTTTACCCACCTGCCAGTTGAAGAG GTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAG
genomic: AACTGCGATACCTGATTGGCGAGGTGTTTACCCACCTGCCAGTTGAAGAGgtatccgttt ... ttgtattcagGTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAG
tctggtataccataccgctgctggctgtgttcatagtctttgtgcttgtattcagGTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAGGAATTACAGGAGGAAAAGAATGAAGTTCTCGCTAAAATGGCTGCTTTGA
ttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattccaatttccttgcacgtggatttgcttccaccattattttgtctggtataccataccgctgctggctgtgttcatagtctttgtgcttgtattcagGTGGAAGAGAAACTGGAATCATTGAAGGAGGAGAACTCTCAGCAGCTCGAGGAATTACAGGAGGAAAAGAATGAAGTTCTCGCTAAAATGGCTGCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT