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...attttgtgtataaactcctgaaccagattcgaaacatatgtgatttgtgagttaactcatttacttgagaccaatagtgaaatgatcttgtgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTAGTGGAAGATCACGACCGAAG
species | Physcomitrella patens |
transcript | PP1S32_182V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162158818|gb|FC335341.1|FC335341
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162152941|gb|FC329243.1|FC329243
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162172189|gb|FC348754.1|FC348754
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: GGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162156021|gb|FC332188.1|FC332188
genomic: GGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162197334|gb|FC372296.1|FC372296
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162159618|gb|FC335796.1|FC335796
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162162061|gb|FC338852.1|FC338852
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162151213|gb|FC327693.1|FC327693
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162173783|gb|FC349959.1|FC349959
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162151358|gb|FC327487.1|FC327487
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTEST: gi|162161280|gb|FC337343.1|FC337343
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
EST: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAG ATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
genomic: CACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagtacat ... tgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATT
tgtgagttaactcatttacttgagaccaatagtgaaatgatcttgtgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTAGTGGAAGATCACGACCGAAG
agttaac putative branch site (score: 18)
atttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgtgtataaactcctgaaccagattcgaaacatatgtgatttgtgagttaactcatttacttgagaccaatagtgaaatgatcttgtgtccaacagATGCGAGCTACTGTCAAAGAAGTGGCGTCTTGCTTTCCAACTGCGGTGATTAGTGGAAGATCACGACCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA