1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caagtgtgatttcgaaccttggatatgtgctaatgctacttcaaaatatttctgtgcttcattcttgggtactcataattgactcttacaatactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
species | Physcomitrella patens |
transcript | PP1S246_34V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|100438401|gb|BY979938.1|BY979938
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTNAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|100441350|gb|BY962639.1|BY962639
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|208354942|gb|DC914206.1|DC914206
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|208376207|gb|DC910783.1|DC910783
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|208373747|gb|DC936560.1|DC936560
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAGCAGTCAAAGTTGGCTGCAAGAAAGEST: gi|208360850|gb|DC934746.1|DC934746
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGT-----G -TG--CACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|100430149|gb|BY978271.1|BY978271
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|208382418|gb|DC927952.1|DC927952
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: AAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|100410692|gb|BY992221.1|BY992221
genomic: AAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAGEST: gi|18373885|gb|BJ205463.1|BJ205463
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
EST: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATG GTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
genomic: GAATAAGGGAGCCAAAAACGACTGCCCTCATTTTTGCATCTGGTAAAATGgtattgtccc ... atactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
atatttctgtgcttcattcttgggtactcataattgactcttacaatactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
ctcttac putative branch site (score: 4)
tactctc putative PPT
tcataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtgtgatttcgaaccttggatatgtgctaatgctacttcaaaatatttctgtgcttcattcttgggtactcataattgactcttacaatactctcagGTGTGCACGGGTGCCAAGAGTGAGCAACAGTCAAAGTTGGCTGCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA