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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcaatgtaggattgggcattctttagtaaattcatatttaaagttcttttatgccttctgatcgcttgtttcctccgacatgacatgtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG

Basic information

species Physcomitrella patens
transcript PP1S180_53V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18324844|gb|BJ156839.1|BJ156839
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: gi|208374343|gb|DC941156.1|DC941156
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: gi|100392407|gb|BY953347.1|BY953347
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: gi|100358061|gb|BY965452.1|BY965452
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: gi|100404244|gb|BY955328.1|BY955328
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: gi|208376225|gb|DC914510.1|DC914510
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAACGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
EST: gi|100398077|gb|BY954076.1|BY954076
EST:     TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGG                         GTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA
genomic: TATTTTCGGTTGTTCTGCTTGTAGCTGTCCTAAGCTGTAGCGGCCAGAGGgtaaggaaga ... gtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcttttatgccttctgatcgcttgtttcctccgacatgacatgtgcttacagGTAGCAGATATCACGTGTGGTGTGGACGGGAGTTTGGGCAGCGATTTTCAAGAGTGGGAAGGGGAATTCTTCCCTAACATTTCGTACATCAAATATGAG
              ttctgat  putative branch site (score: 3)
     ttttat  TA-rich tract