1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactggccacgactattgaacttgacatttttactgtgccatgcaccatcaggaacttgtttagttatcctctcctgtttgctgtttacgagacatctgcacaagattgctttagtgttgcttgtgccactgaagttttgtgttttctggtttcttgatgtatgaaatttgatcacctccttgacttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACGACGTGTACATTGTATACGAGTTGATGGATACGGACCTACACCAGATCA
species | Physcomitrella patens |
transcript | PP1S149_39V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAAC GTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACEST: gi|162154102|gb|FC330545.1|FC330545
genomic: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAACgtactggcca ... cttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAAC
EST: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAAC GTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACEST: gi|22133027|gb|BQ827504.1|BQ827504
genomic: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAACgtactggcca ... cttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAAC
EST: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAAC GTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACEST: gi|100357153|gb|BY983720.1|BY983720
genomic: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAACgtactggcca ... cttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAAC
EST: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAAC GTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACEST: gi|18347968|gb|BJ180015.1|BJ180015
genomic: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAACgtactggcca ... cttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAAC
EST: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAAC GTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAAC
genomic: AGCGAACACTGCGTGAAATAAAACTCCTCCGGCATATGGATCATGAAAACgtactggcca ... cttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAAC
gtgttttctggtttcttgatgtatgaaatttgatcacctccttgacttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACGACGTGTACATTGTATACGAGTTGATGGATACGGACCTACACCAGATCA
ccttgac putative branch site (score: 4)
tatgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactggccacgactattgaacttgacatttttactgtgccatgcaccatcaggaacttgtttagttatcctctcctgtttgctgtttacgagacatctgcacaagattgctttagtgttgcttgtgccactgaagttttgtgttttctggtttcttgatgtatgaaatttgatcacctccttgacttggagcagGTCGTTGCCATTACAGACATCATTCGTCCCCCAACTAGGGAGAATTTCAACGACGTGTACATTGTATACGAGTTGATGGATACGGACCTACACCAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA