1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccgcgtgctcttctgtcccttcctttcttacccaaatgtatttttcatctacatattgagtggaaagcaatatgtacacgtttcacttgtcgatgcagtattaattatgagatgtctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGGGAGAAAGAAGCTATCAGCCTAGAAATACATCTTGAGCTTTCGTTTCTGT
species | Physcomitrella patens |
transcript | PP1S102_176V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAG AAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGGEST: gi|37823725|gb|BJ581791.1|BJ581791
genomic: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAGgtaccgcgtg ... tctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGG
EST: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAG AAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGGEST: gi|18344526|gb|BJ176567.1|BJ176567
genomic: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAGgtaccgcgtg ... tctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGG
EST: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAG AAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCANGCTTGCTAAEST: gi|162219051|gb|FC394946.1|FC394946
genomic: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAGgtaccgcgtg ... tctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAA
EST: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAG AAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGG
genomic: TTTCAACCCAGCACTATCAAACGCAAGCGCAGGCATGGTTATTTGGAGAGgtaccgcgtg ... tctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGG
atatgtacacgtttcacttgtcgatgcagtattaattatgagatgtctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGGGAGAAAGAAGCTATCAGCCTAGAAATACATCTTGAGCTTTCGTTTCTGT
tattaat putative branch site (score: 2)
tattaattatgagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgcgtgctcttctgtcccttcctttcttacccaaatgtatttttcatctacatattgagtggaaagcaatatgtacacgtttcacttgtcgatgcagtattaattatgagatgtctattgcagAAAATCTACTGTTGGAGGCCGCAGAGTGCTTGCTCGCAGGCTTGCTAAGGGGAGAAAGAAGCTATCAGCCTAGAAATACATCTTGAGCTTTCGTTTCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT