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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattcccatgtggcaaatcttttgaggtcgtatgaggtggaacaatatgaagtttaatggtcactattgattttgttcttgtttttgattgtgatcacagAGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTCTCAACACCTAACAAGTAGTAGAAATTTTACGGCGCTCCACAGCCGCTCA

Basic information

species Physcomitrella patens
transcript PP1S6_422V6.2
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37833005|gb|BJ591017.1|BJ591017
EST:     TGCAAGTAGCAGCTGTGATCGAG                         AGACTGTGTTCCCCATTCCCAACGACGACCTGAGGTCTTGTACGATCTGCT
genomic: TGCAAGTAGCAGCTGTGATCGAGgtctctcctc ... gtgatcacagAGACTGTGTTCCCCATT-CCAACGACGACCTGAGGTCTTGTACGATCTGCT
EST: gi|7286924|gb|AW599411.1|AW599411
EST:     GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAG                         AGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
genomic: GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAGgtctctcctc ... gtgatcacagAGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
EST: gi|37834333|gb|BJ592345.1|BJ592345
EST:     GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAG                         AGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
genomic: GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAGgtctctcctc ... gtgatcacagAGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
EST: gi|208351401|gb|DC921596.1|DC921596
EST:     GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAG                         AGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
genomic: GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAGgtctctcctc ... gtgatcacagAGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
EST: gi|37832792|gb|BJ590804.1|BJ590804
EST:     GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAG                         AGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC
genomic: GTCGCCCATGGTCAGAAGCGACCTTACTGCAAGTAGCAGCTGTGATCGAGgtctctcctc ... gtgatcacagAGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaagtttaatggtcactattgattttgttcttgtttttgattgtgatcacagAGACTGTGTTCCCCATTCCAACGACGACCTGAGGTCTTGTACGATCTGCTCTCAACACCTAACAAGTAGTAGAAATTTTACGGCGCTCCACAGCCGCTCA
                   tattgatttt  TA-rich tract