1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...caaccttcattagtgtcttttgataaaattctggtctagcatatacactcttttcgtgctgaaacgtgtgcttgaattcaactggtatcgataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCATTGGCGTACATGCGGCCGCTTGCCATCTGGGCAATGCAGTGGGCATTG
species | Physcomitrella patens |
transcript | PP1S134_55V6.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|37841217|gb|BJ599225.1|BJ599225
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|37850757|gb|BJ608765.1|BJ608765
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|162271706|gb|FC448631.1|FC448631
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|162260999|gb|FC437419.1|FC437419
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|162165031|gb|FC342222.1|FC342222
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|37849684|gb|BJ607692.1|BJ607692
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCEST: gi|37824815|gb|BJ582881.1|BJ582881
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
EST: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGG ATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
genomic: GCGTTCACAGCTGCTCAGGGTGTGTTTCTAGCCGGCTGGTCTGATCTCGGgtgagtattt ... ataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATC
cactcttttcgtgctgaaacgtgtgcttgaattcaactggtatcgataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCATTGGCGTACATGCGGCCGCTTGCCATCTGGGCAATGCAGTGGGCATTG
ataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaccttcattagtgtcttttgataaaattctggtctagcatatacactcttttcgtgctgaaacgtgtgcttgaattcaactggtatcgataaatgcagATATTGGTTTCAAACTCCGGAAGCATGGACAATCGATGGCTACTTCAGATCATTGGCGTACATGCGGCCGCTTGCCATCTGGGCAATGCAGTGGGCATTG
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