1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttgcagtgctggagccgttgaagttgcagctggttactttgtaggtgtagagttcagaaattttgactggaccctatgtgggctgtattttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATGGCTCAGCTTTCCCTATGAAAATGGACATTGAACGTCAAATTCTGACAC
species | Physcomitrella patens |
transcript | PP1S9_363V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|19776828|gb|BQ039121.1|BQ039121
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGATCT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|67579124|gb|BJ951275.1|BJ951275
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|18347726|gb|BJ179773.1|BJ179773
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|162220259|gb|FC395679.1|FC395679
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|67576775|gb|BJ949599.1|BJ949599
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|67718482|gb|BJ968741.1|BJ968741
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|18325360|gb|BJ157356.1|BJ157356
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|67507848|gb|BJ940724.1|BJ940724
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|18339020|gb|BJ171046.1|BJ171046
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|67700310|gb|BJ960543.1|BJ960543
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|18333307|gb|BJ165321.1|BJ165321
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGNCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|37826798|gb|BJ584810.1|BJ584810
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|67570416|gb|BJ943240.1|BJ943240
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|18325443|gb|BJ157439.1|BJ157439
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATEST: gi|18333399|gb|BJ165413.1|BJ165413
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
EST: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACT TCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
genomic: TTAAGAACGATATGTTGCCCGTTCATCCCGTGGAGATCATTCAACGAACTgtaagatatc ... ttttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTAT
aggtgtagagttcagaaattttgactggaccctatgtgggctgtattttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATGGCTCAGCTTTCCCTATGAAAATGGACATTGAACGTCAAATTCTGACAC
ttttgac putative branch site (score: 10)
agaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgcagtgctggagccgttgaagttgcagctggttactttgtaggtgtagagttcagaaattttgactggaccctatgtgggctgtattttgtgaagTCCAAAAGCATGCAGGCGCAGACGAAACGCACCTTGCTTGAGAGGGCTTATGGCTCAGCTTTCCCTATGAAAATGGACATTGAACGTCAAATTCTGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - -tgctgga