1 5' 3' | 2 5' 3' | 3 5' 3' |
...attgtaactatttcgtcattatattgtcagatagatgtttcaacttacagagactagattaacaagatttgccatagactaacatgatttgttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAGGAACGCCAACGACTTGGCTGTTCGGAAGGCCCGCAAGGAGGAATTGAA
species | Physcomitrella patens |
transcript | PP1S9_355V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162238831|gb|FC415060.1|FC415060
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162248564|gb|FC425340.1|FC425340
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162242345|gb|FC416114.1|FC416114
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162248563|gb|FC425339.1|FC425339
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162250415|gb|FC426277.1|FC426277
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162234155|gb|FC410759.1|FC410759
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAEST: gi|162242359|gb|FC416115.1|FC416115
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
EST: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCG TCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
genomic: CAATGATAAGCAGCCATTTACATCGCTACCTACCGACTATTCTTGCCCCGgtaacttgcc ... gttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTA
tacagagactagattaacaagatttgccatagactaacatgatttgttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAGGAACGCCAACGACTTGGCTGTTCGGAAGGCCCGCAAGGAGGAATTGAA
gactaac putative branch site (score: 8)
tagattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtaactatttcgtcattatattgtcagatagatgtttcaacttacagagactagattaacaagatttgccatagactaacatgatttgttggggaagTCTGTCTTGCACCGAAGAGAAGGTTCAAGGTCTACGATGCACCAGTGGCTAGGAACGCCAACGACTTGGCTGTTCGGAAGGCCCGCAAGGAGGAATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA