1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ctgatgtcatactacgaaggcctgcttgtgtgcacgttttcggacgtgggaaggtatgttatgatggtcatttgagctgcattgttgtgattggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAGCGGCTAGTGAAGTAGCTGAAGGAAAGTTGACCGACCATTTTCCACTTG
species | Physcomitrella patens |
transcript | PP1S9_243V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCGTT GTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAEST: gi|162192987|gb|FC369903.1|FC369903
genomic: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATTgtaatttctg ... ttggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAA
EST: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATT GTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAEST: gi|162189500|gb|FC365514.1|FC365514
genomic: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATTgtaatttctg ... ttggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAA
EST: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATT GTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAEST: gi|18361637|gb|BJ193703.1|BJ193703
genomic: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATTgtaatttctg ... ttggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAA
EST: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATT GTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAEST: gi|18368538|gb|BJ200623.1|BJ200623
genomic: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATTgtaatttctg ... ttggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAA
EST: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATT GTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAA
genomic: CGAAACAACTTGTTGAGGCGCTTGGCATTCTCAAGAAGGCTGCAGCCATTgtaatttctg ... ttggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAA
gtgggaaggtatgttatgatggtcatttgagctgcattgttgtgattggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAGCGGCTAGTGAAGTAGCTGAAGGAAAGTTGACCGACCATTTTCCACTTG
tatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatgtcatactacgaaggcctgcttgtgtgcacgttttcggacgtgggaaggtatgttatgatggtcatttgagctgcattgttgtgattggtggcagGTGAACATGGAATATGGTCTGGACAAGAAATATGGGGAAGCCATCGTAAAAGCGGCTAGTGAAGTAGCTGAAGGAAAGTTGACCGACCATTTTCCACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgca