1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagttccttttctgatcaattgaagtttgaatcgagacgtcgtttctaggaattggaatttttggaaatgttctttgctggatgacatgacactgatggaaatgcttttgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAACGAAGATTCTACGCTCGGCACCTGTTGGAGGAGGTTGCATCAGCACTGC
species | Physcomitrella patens |
transcript | PP1S83_158V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAAEST: gi|100371199|gb|BY985987.1|BY985987
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAAEST: gi|100417823|gb|BY975671.1|BY975671
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAAEST: gi|208353856|gb|DC906544.1|DC906544
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAAEST: gi|18347323|gb|BJ179369.1|BJ179369
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAAEST: gi|18325374|gb|BJ157370.1|BJ157370
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAAEST: gi|100445174|gb|BY964473.1|BY964473
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
EST: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTA TGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
genomic: TTCATCGCGGAGCTTTGCTCCTCGCATATTTGCCGCACGCCTCAGAATTAgtgagttcct ... tgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAA
ggaaatgttctttgctggatgacatgacactgatggaaatgcttttgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAACGAAGATTCTACGCTCGGCACCTGTTGGAGGAGGTTGCATCAGCACTGC
cactgat putative branch site (score: 3)
tgctttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttccttttctgatcaattgaagtttgaatcgagacgtcgtttctaggaattggaatttttggaaatgttctttgctggatgacatgacactgatggaaatgcttttgggcggcagTGGCTGAGAGTGACCCTGTGCTTGATTGGATCAAGGGGGACGGGGGTGCAACGAAGATTCTACGCTCGGCACCTGTTGGAGGAGGTTGCATCAGCACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG