1 5' 3' | 2 5' 3' | 3 5' 3' |
...caggtggacattttgcgcgaccaacgttttcttatgtatgaagtagctaatttgcgtatctttataaattgaggggctagattgtcatttggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG
species | Physcomitrella patens |
transcript | PP1S79_221V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGEST: gi|162266195|gb|FC441932.1|FC441932
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGEST: gi|162224605|gb|FC400501.1|FC400501
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGEST: gi|67573415|gb|BJ946239.1|BJ946239
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGEST: gi|67696796|gb|BJ957029.1|BJ957029
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGEST: gi|18328787|gb|BJ160792.1|BJ160792
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGEST: gi|162266209|gb|FC441933.1|FC441933
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
EST: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTG TGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
genomic: ACAGGCATTGTGATGGCAAACTTGTTCTCAAAGTCACTGATGACAAAGTGgtgcgtttta ... ggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAG
gctaatttgcgtatctttataaattgaggggctagattgtcatttggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG
agctaat putative branch site (score: 2)
tatctttataaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggtggacattttgcgcgaccaacgttttcttatgtatgaagtagctaatttgcgtatctttataaattgaggggctagattgtcatttggttttgcagTGTCTGAAGTTCAAGACAGATCAAGCTCAGGACATAAGGAAGATGGAGAAGCTGAATAATACATTTTTTAGTATGATGGCCCGAGGACCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG