1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttagaatccactagtttttgccttggtttgcttcaacagaaatagtgagtgtcttgcggatgttcaaatcattacctgaaacatgtgcgtgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGGGCTTGATGTGTTCGCTCACAATATTGAAACTGTTGAAGAGCTTCAAAG
species | Physcomitrella patens |
transcript | PP1S70_295V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGEST: gi|162169984|gb|FC345924.1|FC345924
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
EST: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGEST: gi|7207147|gb|AW561156.1|AW561156
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
EST: TGTGAAAAATCTGAAAGAGCGCATACCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGGTGATCCTGCGTGTGTGGAAAGAGTTGCAACATCAGEST: gi|67727985|gb|BJ978244.1|BJ978244
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
EST: TGTGAAAAATNTGAAAGAGCGCAANCCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGEST: gi|162163284|gb|FC339402.1|FC339402
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
EST: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGEST: gi|7047031|gb|AW476925.1|AW476925
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
EST: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGEST: gi|162200155|gb|FC376027.1|FC376027
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
EST: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTG TTCCGGATTTCCGTGCTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
genomic: TGTGAAAAATCTGAAAGAGCGCAAACCAACAATGCTTGTTGAAGCGCTTGgtaagcgttt ... tgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGG
gtgagtgtcttgcggatgttcaaatcattacctgaaacatgtgcgtgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGGGCTTGATGTGTTCGCTCACAATATTGAAACTGTTGAAGAGCTTCAAAG
aaatcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagaatccactagtttttgccttggtttgcttcaacagaaatagtgagtgtcttgcggatgttcaaatcattacctgaaacatgtgcgtgcttcacagTTCCGGATTTCCGTGGTGATCCGGCGTGTGTGGAAAGAGTTGCAACATCGGGGCTTGATGTGTTCGCTCACAATATTGAAACTGTTGAAGAGCTTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - -tgcttca