1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tagatgcttgcgggttgttgaacctcatctctgccagatgatacagattgtgaatgaaccatctgttcaccagattcaatttgatgtttgatttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG
species | Physcomitrella patens |
transcript | PP1S58_188V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAG GTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGEST: gi|208398913|gb|DC912072.1|DC912072
genomic: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAGgcatgttact ... atttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAG
EST: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAG GTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGEST: gi|18373745|gb|BJ205323.1|BJ205323
genomic: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAGgcatgttact ... atttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAG
EST: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAG GTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGEST: gi|18362650|gb|BJ194721.1|BJ194721
genomic: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAGgcatgttact ... atttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAG
EST: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAG GTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAG
genomic: TGCGCGCTTTACATTGATGGCGTTCTGTTTGGGCTTCCAACACGAACCAGgcatgttact ... atttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAG
gattgtgaatgaaccatctgttcaccagattcaatttgatgtttgatttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG
gtttgat putative branch site (score: 5)
tttccgc CT-rich tract
attcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgcttgcgggttgttgaacctcatctctgccagatgatacagattgtgaatgaaccatctgttcaccagattcaatttgatgtttgatttccgcagGTTGTCTTCTATTGAAAAGCCATGGCGTTGGAATGAACTCGTCACGCTCAGTGCCAAATATCGAGACTTATCATCTAATGCCCAGCTTGCTCTGACG
- - - - - - - -tgttgaa