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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcgttgattagggcttgtctccttagtgcattcatcaacaatgccatggagttttgagctgttccatcaagcatgacttggggcgtttatgttgtgcagGTAGAGATGAATGGTGTGAATTGTTTCAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTAGAATG

Basic information

species Physcomitrella patens
transcript PP1S47_78V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100385731|gb|BY987796.1|BY987796
EST:     TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCG                         GTAGAGATGAATGGTGTGAATTGTTTTCA-CATGATAAAAAGTCTTCCGGC
genomic: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagc ... tgttgtgcagGTAGAGATGAATGGTGTGAATTGTTT-CAACATGATAAAAAGTCTTCCGGC
EST: gi|208387521|gb|DC933384.1|DC933384
EST:     TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCG                         GTAGAGATGAATGGTGTGAATTGTTTCAACATGATAAAAAGTCTTCCGGCT
genomic: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagc ... tgttgtgcagGTAGAGATGAATGGTGTGAATTGTTTCAACATGATAAAAAGTCTTCCGGCT
EST: gi|100414748|gb|BY956844.1|BY956844
EST:     TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCG                         GTAGAGATGAATGGTGTGAAATTGTTTCAACATGATAAAA-GTCTTCCGGC
genomic: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagc ... tgttgtgcagGTAGAGATGAATGGTGTGAA-TTGTTTCAACATGATAAAAAGTCTTCCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggagttttgagctgttccatcaagcatgacttggggcgtttatgttgtgcagGTAGAGATGAATGGTGTGAATTGTTTCAACATGATAAAAAGTCTTCCGGCTGAGGTTGATTGGGAACTAGAATG
                                         tttatgtt  TA-rich tract