1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttatatccatactagcatatagatgttgatgatgattagttttatttgattttactttcggtttaatgttgtgatactgattctagattgaatacgttcagaattttgttccggattaatttcttgaattctgaccttgtagtctaaggctgggaccccacacgtgttccgaactgatcatatggtgtcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACAAAAT
species | Physcomitrella patens |
transcript | PP1S426_34V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|208371545|gb|DC936266.1|DC936266
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|208355863|gb|DC930226.1|DC930226
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|18366083|gb|BJ198161.1|BJ198161
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|100447366|gb|CJ971665.1|CJ971665
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|100358169|gb|BY965507.1|BY965507
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|208392547|gb|DC933947.1|DC933947
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|162236819|gb|FC412562.1|FC412562
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|162160226|gb|FC337123.1|FC337123
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|162217443|gb|FC393119.1|FC393119
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|208378639|gb|DC903670.1|DC903670
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACEST: gi|208390426|gb|DC933683.1|DC933683
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
EST: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAG GTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
genomic: GGATGGACCAGCTTGGCCGGCATTGCCCTCATTTTGGTGTTGATACAGAGgttatatcca ... tcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTAC
tctaaggctgggaccccacacgtgttccgaactgatcatatggtgtcatcaacagGTTGTCATGCCTCTTCCGAAGCCTGTAGGTTTTACTGAGTCCGAGAACTACAAAAT
aactgat putative branch site (score: 4)
atcatat TA-rich tract