1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtatacctctcacctattcctcatgtacatctgacaaaaattaacaacaaatgaacagataagtacgtaatgcaaaacattcttgcacttctaacctgagtgaggcatttgtcgattgcagcaacaagaatgtttggaagaatagtttgactttttacttacatgtgaacaatgttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTGTAGCTAGAGCGCCTTCCTGGACAGTAACGGTTTTGACGTTTGTAGTCG
species | Physcomitrella patens |
transcript | PP1S41_163V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT GTGAAACCTTGTTCGEST: gi|100355722|gb|BY965113.1|BY965113
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCG
EST: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTEST: gi|208397811|gb|DC912020.1|DC912020
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTEST: gi|100443634|gb|BY963731.1|BY963731
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTEST: gi|162180390|gb|FC355811.1|FC355811
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
aatgtttggaagaatagtttgactttttacttacatgtgaacaatgttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTGTAGCTAGAGCGCCTTCCTGGACAGTAACGGTTTTGACGTTTGTAGTCG
tacttac putative branch site (score: 1)
tttttactta TA-rich tract