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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG

Basic information

species Physcomitrella patens
transcript PP1S375_10V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM5G899149_T01 (Zea mays), 3'ss of exon 2
gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG
                                       |  ||   |  |||||   | | ||  | |  ||  | ||||  ||  ||  |  ||   ||| ||||   ||           | | |  |  ||   |   | |                   | ||||| |||||  | |||||||| |||||  | |||||||| ||||||||||| ||  | |||||||| |||||||||||| | || |
--------------------------------------tgtgctcagacatgtttgacttgcattgcaacatt--agaacttaatt-ttgctctgaactgtgtatgttgtag-----------aagatatatgatgtttgctgtact-----------------tgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATG

upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG
                                                      || ||||      ||||||      |       | | || | |   |        ||   ||| |||  |     | ||   | |   |||  ||| |  |           ||||| |||||  | |||||||| |||||  | |||||||| ||||||||||||||  | || ||||| |||||||||||  | || |
-----------------------------------------------------gttcttgga-----tattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatga--cgttg--gcactattttttactcg-------cagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG

upper sequence: PP1S375_10V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG
                                                               | || || | || | |  |  |     |||| | |      |||       | |  ||  |      | |   | |  | | |  || |||  |    |  |  ||||||| ||  | ||| ||||| ||||  | |||||||| ||||| ||||||||||||||||||||||| || ||||| || ||  
---------------------------------------------------------------ttccaatgtgttgtcaaccactaaaa-atgaaacttagttttgttttgtaat-tgatggaaacccttaaagaggttgtctccttgttgtgatta----tgttaaagGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100424755|gb|BY976799.1|BY976799
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|19790373|gb|BQ041838.1|BQ041838
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67718495|gb|BJ968754.1|BJ968754
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67726318|gb|BJ976577.1|BJ976577
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67704664|gb|BJ964897.1|BJ964897
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162212775|gb|FC388575.1|FC388575
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67702651|gb|BJ962884.1|BJ962884
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|18360385|gb|BJ192447.1|BJ192447
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162232635|gb|FC409186.1|FC409186
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67578206|gb|BJ950373.1|BJ950373
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|161982662|gb|EE296433.1|EE296433
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162269890|gb|FC445914.1|FC445914
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67723609|gb|BJ973868.1|BJ973868
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|15327410|gb|BI488049.1|BI488049
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67726053|gb|BJ976312.1|BJ976312
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67702832|gb|BJ963065.1|BJ963065
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162202640|gb|FC378985.1|FC378985
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67701868|gb|BJ962101.1|BJ962101
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67724549|gb|BJ974808.1|BJ974808
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCCGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|37837074|gb|BJ595082.1|BJ595082
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67576802|gb|BJ949626.1|BJ949626
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162222274|gb|FC397710.1|FC397710
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67727685|gb|BJ977944.1|BJ977944
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67717538|gb|BJ967797.1|BJ967797
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67709536|gb|BJ965352.1|BJ965352
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67703524|gb|BJ963757.1|BJ963757
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67719391|gb|BJ969650.1|BJ969650
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67720355|gb|BJ970614.1|BJ970614
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162232634|gb|FC409185.1|FC409185
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|37846250|gb|BJ604258.1|BJ604258
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|18365795|gb|BJ197873.1|BJ197873
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|37838525|gb|BJ596533.1|BJ596533
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67717812|gb|BJ968071.1|BJ968071
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|7147921|gb|AW509843.1|AW509843
EST:     CCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: CCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67712841|gb|BJ966290.1|BJ966290
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCCGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|67701073|gb|BJ961306.1|BJ961306
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|162202641|gb|FC378986.1|FC378986
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
EST: gi|18357712|gb|BJ189771.1|BJ189771
EST:     GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAG                         GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT
genomic: GCCATGTGAACCCTATTCGGTGCTCCAACTGCGGGCGCTGTGTGCCCAAGgtaacttttt ... aataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG
                     tgctaac  putative branch site (score: 1)
                              atcattctgaaaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG