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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaattttgagaaacttgtcagttcccatttcaagcatcatttcggtagttatcttaactagttcaaggattctgatgttttttcttcctctatgtcagCTCATGGACATTAATGAAAGTCCAGTTTATGTGCTCCTGAATCCAACTATCAACCACGCACAGAAAGATCTTCCTATCAGTATTTTCGAGAGCG

Basic information

species Physcomitrella patens
transcript PP1S34_439V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S34_439V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA06G47850.1 (Glycine max), 3'ss of exon 2
acaaattttgagaaacttgtcagttcccatttcaagcatcatttcggtagttatcttaactagttcaaggattctgatgtttttt---cttcctctatgtcagCTCATGGACATTAATGAAAGTCCAGTTTATGTGCTCCTGAATCCAACTATCAACCACGCACAGAAAGATCTTCCTATCAGTATTTTCGAGAGCG
    || |  |      |  ||||      ||||    ||   |   |    ||   |  || || |  | ||||||| || | |   | ||  || |  ||| | ||||| || |||||||||||||||||||| || || |||||  ||||||||||  | ||||| ||||| ||| |||||||||| || || |
-ttcatctgaaattctcttccagtgatttattcagaagtcgaatacattcaaattcaagttacttta--gtttctgattttatctggacctctgctgtaacagTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAACCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTG

upper sequence: PP1S34_439V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA04G12890.1 (Glycine max), 3'ss of exon 2
acaaattttgagaaacttgtcagttcccatttcaagcatcatttcggtagttatcttaactagttcaaggattctgatgtttttt---cttcctctatgtcagCTCATGGACATTAATGAAAGTCCAGTTTATGTGCTCCTGAATCCAACTATCAACCACGCACAGAAAGATCTTCCTATCAGTATTTTCGAGAGCG
    || |  |      | |||||      ||||   ||||  |    | | |  || |  | |     | |||||||  | | |   | ||  || |  ||| | ||||| || |||||||||||||||||||| || || |||||  ||||||| ||  | ||||| ||||| ||| |||||||||| || || |
-ttcatctgaaattctctttcagtgatttattcagaaatcaaat--acattcaagttcaagaatctttagtttctgattatatctggacctctgctgtaacagTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCATTCTCAGAAGGATCTACCTGTCAGTATTTTTGAAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtagttatcttaactagttcaaggattctgatgttttttcttcctctatgtcagCTCATGGACATTAATGAAAGTCCAGTTTATGTGCTCCTGAATCCAACTATCAACCACGCACAGAAAGATCTTCCTATCAGTATTTTCGAGAGCG
                          ttctgatgttttttct  CT-rich tract
     ttatcttaa  TA-rich tract