Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatagtagcttcatcacgaagtacagcattgtatccaaatcttttatttagcggtttgttaactaccatctcgggtcactcgggtcctaatcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S134_153V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386958|gb|DC941620.1|DC941620
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67569446|gb|BJ942270.1|BJ942270
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67723486|gb|BJ973745.1|BJ973745
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|19786234|gb|BQ040452.1|BQ040452
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18361441|gb|BJ193507.1|BJ193507
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTTGGGTGGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGT-GG-TGG-TGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAG
EST: gi|19789984|gb|BQ041627.1|BQ041627
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|37839158|gb|BJ597166.1|BJ597166
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67578955|gb|BJ951106.1|BJ951106
EST:     TGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: TGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18340971|gb|BJ173003.1|BJ173003
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18349653|gb|BJ181703.1|BJ181703
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162258234|gb|FC434633.1|FC434633
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162204466|gb|FC381694.1|FC381694
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67722675|gb|BJ972934.1|BJ972934
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67702146|gb|BJ962379.1|BJ962379
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162224345|gb|FC400176.1|FC400176
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|208362372|gb|DC954618.1|DC954618
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162215005|gb|FC391293.1|FC391293
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67723133|gb|BJ973392.1|BJ973392
EST:     GCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: GCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67709370|gb|BJ965186.1|BJ965186
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67704162|gb|BJ964395.1|BJ964395
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67702999|gb|BJ963232.1|BJ963232
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67721703|gb|BJ971962.1|BJ971962
EST:     TTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: TTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|37852333|gb|BJ610341.1|BJ610341
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67720641|gb|BJ970900.1|BJ970900
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67703195|gb|BJ963428.1|BJ963428
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGANGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18372815|gb|BJ204417.1|BJ204417
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162236228|gb|FC411997.1|FC411997
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162238784|gb|FC417626.1|FC417626
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18333098|gb|BJ165112.1|BJ165112
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67703404|gb|BJ963637.1|BJ963637
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162217394|gb|FC392862.1|FC392862
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67507675|gb|BJ940555.1|BJ940555
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162236229|gb|FC411998.1|FC411998
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67723445|gb|BJ973704.1|BJ973704
EST:     TGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: TGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162204812|gb|FC381169.1|FC381169
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162208718|gb|FC384854.1|FC384854
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18335117|gb|BJ167135.1|BJ167135
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67721506|gb|BJ971765.1|BJ971765
EST:     GCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: GCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162227082|gb|FC403388.1|FC403388
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162224344|gb|FC400175.1|FC400175
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATTTCGGAG                         GTGGTGGTGGTGGTCCCGTCCCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67692711|gb|BJ952944.1|BJ952944
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|162238785|gb|FC417627.1|FC417627
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|19781834|gb|BQ039779.1|BQ039779
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGNNGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTG--GTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGG
EST: gi|67721915|gb|BJ972174.1|BJ972174
EST:     AGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: AGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18331621|gb|BJ163632.1|BJ163632
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|37828615|gb|BJ586627.1|BJ586627
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|67704637|gb|BJ964870.1|BJ964870
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
EST: gi|18325140|gb|BJ157136.1|BJ157136
EST:     CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAG                         GTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG
genomic: CAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 34 (downstream exon)
Score: 16

GTTAAAGCCGCGAATGTCTCAGTTGAGGGATACTGGCCTTCCCTGTTCGCCAAGCTTTGCGAGAAGAGGAGTGTCGAGGATCTCATCACCAATGTCGGAGgtactaatta ... atcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttagcggtttgttaactaccatctcgggtcactcgggtcctaatcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG
                                        tcctaat  putative branch site (score: 16)
                                              tcttttc  CT-rich tract
                                           taatctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatagtagcttcatcacgaagtacagcattgtatccaaatcttttatttagcggtttgttaactaccatctcgggtcactcgggtcctaatcttttcagGTGGTGGTGGTGGTGCCGTCGCCATGAGCGCTGCACCCGCCGCTGGAGGTGCCGCTGCCGCTGTTGAGGCTCCAAAGGAGGTCGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG