1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...agcatggttgaagaacgattttgcttagagttatgttaaggaagcggaaacttcttgtttttaaactgctgactgatatttgatatggtattctgtacagATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGATGTGCGAAG
species | Physcomitrella patens |
transcript | PP1S262_91V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAG ATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGATEST: gi|162210225|gb|FC386411.1|FC386411
genomic: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAGgtatgccttc ... ttctgtacagATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGAT
EST: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAG ATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGATEST: gi|162188042|gb|FC365240.1|FC365240
genomic: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAGgtatgccttc ... ttctgtacagATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGAT
EST: ACGATCTTCAAA-TCACATGATTATCTGTGGATTTGGA-GAGTAGGACAG ATTATTTCGCAATTATTGEST: gi|162192376|gb|FC369084.1|FC369084
genomic: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAGgtatgccttc ... ttctgtacagATTATTTCGCAATTATTG
EST: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAG ATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGAT
genomic: ACGATCTTCAAAATCACATGATTATCTGTGGATTTGGAAGAGTAGGACAGgtatgccttc ... ttctgtacagATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGAT
ggaaacttcttgtttttaaactgctgactgatatttgatatggtattctgtacagATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGATGTGCGAAG
ttcttgtttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatggttgaagaacgattttgcttagagttatgttaaggaagcggaaacttcttgtttttaaactgctgactgatatttgatatggtattctgtacagATTATTTCGCAATTATTGGCTGAGAGGTTGATACCATTTGTTGCTCTTGATGTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG