1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgtgtacctgtaccactttgctagcagttacttgaaacaagtgtccaaatcactttgaatatgggttcaaatattctgtagtttctactagctctgtttgccacaaatgattacatatagtcttacgatgggtaactctgtaactttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCTCAGATGTCGACTGGAGAAACCTACCCGCAGGCTTTTCATGCATACCCT
species | Physcomitrella patens |
transcript | PP1S173_136V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GAGTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCEST: gi|162190104|gb|FC365846.1|FC365846
genomic: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATC
EST: GAGTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCEST: gi|37834281|gb|BJ592293.1|BJ592293
genomic: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATC
EST: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCEST: gi|37852520|gb|BJ610528.1|BJ610528
genomic: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATC
EST: AGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCEST: gi|18341657|gb|BJ173692.1|BJ173692
genomic: AGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATC
EST: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCEST: gi|162245434|gb|FC421336.1|FC421336
genomic: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATC
EST: GAGTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCEST: gi|162241844|gb|FC418099.1|FC418099
genomic: GATTCAGTGATACCTGCTACAAACCCTTCCATACCAGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATC
EST: AGTCAGTGATACCTGCTANCAA-CCCTTCCATACCAGGTCTTCCATCTCG GTCTCACATGAAAACTTCTGTCGTACCC
genomic: ATTCAGTGATACCTGCTA-CAAACCCTTCCATACCAGGTCTTCCATCTCGgtgtgtacct ... ttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCC
ccacaaatgattacatatagtcttacgatgggtaactctgtaactttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCTCAGATGTCGACTGGAGAAACCTACCCGCAGGCTTTTCATGCATACCCT
ctgtaac putative branch site (score: 13)
aatgattacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtacctgtaccactttgctagcagttacttgaaacaagtgtccaaatcactttgaatatgggttcaaatattctgtagtttctactagctctgtttgccacaaatgattacatatagtcttacgatgggtaactctgtaactttgtgaacagGTCTCACATGAAAACTTCTGTCGTACCCTCCATTCCCACTTATACCAGATCTCAGATGTCGACTGGAGAAACCTACCCGCAGGCTTTTCATGCATACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA