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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttctgaatgatgtgcgaatcggtcatcactatcgttctaatgcaaagtatataaataaacatgggtattgcatctaatattgcactccctgaattgagtgcgttaaaatattattattgttatttctcttactgacaacttgctgtcactgacaatttactgtttcagCCTTGCCTAGGGGGAGATTCAAAGACCTTGATGTTTGTCAACATCTCGCCTGATATGAAATCCTTGAATGAGTCCTTGTGCTCTCTCAGATTCGCAGCCA

Basic information

species Physcomitrella patens
transcript PP1S80_62V6.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S80_62V6.1 (Physcomitrella patens), 3'ss of exon 15
lower sequence: AT4G21270.1 (Arabidopsis thaliana), 3'ss of exon 16
gtaaggcttctgaatgatgtgcgaatcggtcatcactatcgttctaatgcaaagtatataaataaacatgggtattgcatctaatattgcactccctgaattgagtgcgttaaaatattattattgttatttctcttactgacaacttgctgtcactgacaatttactgtttcagCCTTGCCTAGGGGGAGATTCAAAGACCTTGATGTTTGTCAACATCTCGCCTGATATGAAATCCTTGAATGAGTCCTTGTGCTCTCTCAGATTCGCAGCCA
                                                                               | |  | | |   |   | |||||  ||  |  | | || ||| ||  || |    || |  | || ||  |  || || || | | ||  | |||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||    |  ||       |||||  | ||||| ||| | || || || |
------------------------------------------------------------------------------gtttgttttcgt--tgtttaaattg--tggctacataaatcatttttcataatgtcatttc--aaaatttagtaacaatggca-tatgcttgtgcagCCTTGCCTAGGAGGAGATTCAAAGACCTTGATGTTCGTAAACATTTCGCCTGACCCAACTTCTGCTGGAGAGTCTCTTTGCTCACTCCGGTTTGCTGCTA

upper sequence: PP1S80_62V6.1 (Physcomitrella patens), 3'ss of exon 15
lower sequence: Vv00s0532g00020.t01 (Vitis vinifera), 3'ss of exon 16
gtaaggcttctgaatgatgtgcgaatcggtcatcactatcgttctaatgcaaagtatataaataaacatgggtattgcatctaatattgcactccctgaattgagtgcgttaaaatattattattgttatttctcttactgacaacttgctgtcactgacaatttactgtttcagCCTTGCCTAGGGGGAGATTCAAAGACCTTGATGTTTGTCAACATCTCGCCTGATATGAAATCCTTGAATGAGTCCTTGTGCTCTCTCAGATTCGCAGCCA
                                                                      |  | |   | |  ||||  |   | |  |   |||  || | |   |   |  | ||   ||  | |  ||     ||   || |||  | ||   || | ||||||||| |||| || ||||| |||||| ||||||||||||||||||| || ||       ||  |   ||||||| | |||||||| || || || ||||
---------------------------------------------------------------------agcaagtttctgttctattaaatggcataga---agtttgtcatatcttagctggttttgcatcattaa--gaatttctgaaatctctgttatttgtatgat-cagCCTTGCTTAGGTGGGGATTCCAAGACCCTGATGTTTGTCAACATCTCTCCCGACCCATCTTCAGTTGGTGAGTCCCTATGCTCTCTTAGGTTTGCTGCCA

upper sequence: PP1S80_62V6.1 (Physcomitrella patens), 3'ss of exon 15
lower sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 15
gtaaggcttctgaatgatgtgcgaatcggtcatcactatcgttctaatgcaaagtatataaataaacatgggtattgcatctaatattgcactccctgaattgagtgcgttaaaatattattattgttatttctcttactgacaacttgctgtcactgacaatttactgtttcagCCTTGCCTAGGGGGAGATTCAAAGACCTTGATGTTTGTCAACATCTCGCCTGATATGAAATCCTTGAATGAGTCCTTGTGCTCTCTCAGATTCGCAGCCA
                                                                 |   |||     | | ||| ||   |||  ||    | |         | ||||   |||   || |  |||   |   ||||  | |     |  ||||  | | |||||||||  |||| || || || ||||||||||||||||| |||||||| ||||||      || |||   |||||  | ||||| ||  | ||||||||||
----------------------------------------------------------------tatcagggcccctc-tgtaacatgttactttctattctaac--------attatttccattacaatctgccttg--ggttacttattatgttcaaatattttgtttatcagCCTTGTTTAGGTGGGGACTCCAAGACCTTGATGTTTGTGAACATCTCTCCTGATCCTTCCTCATTGGGAGAGTCGCTTTGCTCCCTACGTTTCGCAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgttatttctcttactgacaacttgctgtcactgacaatttactgtttcagCCTTGCCTAGGGGGAGATTCAAAGACCTTGATGTTTGTCAACATCTCGCCTGATATGAAATCCTTGAATGAGTCCTTGTGCTCTCTCAGATTCGCAGCCA
                                              ctgtttc  CT-rich tract
      ttatttct  TA-rich tract