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gtactttttgtgcaacttgatctggagtgagtttgtaaaatgaacgaatctgtatcggacttaggagaggctattgtcttgatcgcatcagcttatgtgtcctctttactgggagtaaaatttcggtgaaatgtaatgagcatgttgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTTGTTGGAAAGCTGTTGGAGCAAACCAATATGAGCATTGGTTATGATGCTG
species | Physcomitrella patens |
transcript | PP1S52_245V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAG ATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGNGCTGTGGTTEST: gi|37835503|gb|BJ593515.1|BJ593515
genomic: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAGgtactttttg ... tgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTT
EST: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAG ATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTTEST: gi|37827871|gb|BJ585883.1|BJ585883
genomic: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAGgtactttttg ... tgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTT
EST: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAG ATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTTEST: gi|162277341|gb|FC453147.1|FC453147
genomic: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAGgtactttttg ... tgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTT
EST: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAG ATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTTEST: gi|37843570|gb|BJ601578.1|BJ601578
genomic: CGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAGgtactttttg ... tgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTT
EST: GATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAG ATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTT
genomic: GATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAGgtactttttg ... tgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTT
cctctttactgggagtaaaatttcggtgaaatgtaatgagcatgttgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTTGTTGGAAAGCTGTTGGAGCAAACCAATATGAGCATTGGTTATGATGCTG
agtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttttgtgcaacttgatctggagtgagtttgtaaaatgaacgaatctgtatcggacttaggagaggctattgtcttgatcgcatcagcttatgtgtcctctttactgggagtaaaatttcggtgaaatgtaatgagcatgttgtactgcagATGCCCGCCTACACAATTGCACAAAACGCTGGTGTGGAAGGGGCTGTGGTTGTTGGAAAGCTGTTGGAGCAAACCAATATGAGCATTGGTTATGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG