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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaacagagcaatacacggttcaatagtagctgctctacttttcacatgttccatttcaaatctgttgtgttttttatttttgtgttgatgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTTGATGCCAACACAGGCGATGCTCAAACTG

Basic information

species Physcomitrella patens
transcript PP1S180_53V6.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162265051|gb|FC440930.1|FC440930
EST:     GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|208383274|gb|DC928260.1|DC928260
EST:     GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGC
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|37850897|gb|BJ608905.1|BJ608905
EST:     GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|18332905|gb|BJ164918.1|BJ164918
EST:     AGTGCAATCATGNTANCCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: AGTGCAATCATGCTA-CCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|162172551|gb|FC348596.1|FC348596
EST:     GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|208370481|gb|DC952184.1|DC952184
EST:     GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|37839393|gb|BJ597401.1|BJ597401
EST:     ACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: ACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|208359219|gb|DC954156.1|DC954156
EST:     GACTNCAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
EST: gi|37852526|gb|BJ610534.1|BJ610534
EST:     GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAG                         CTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT
genomic: GACTACAAGCTGAACCTAGAGTGCAATCATGCTACCCTGTCTGGGCATAGgtatttgtcg ... tgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgttccatttcaaatctgttgtgttttttatttttgtgttgatgttttgcagCTGCCACCACGAGCTAGAAACTGCACGTATATATGGAATGTTGGGTAGTGTTGATGCCAACACAGGCGATGCTCAAACTG
                                       tgttgat  putative branch site (score: 4)
                     ttgtgttttttatttt  TA-rich tract