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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggctaagacgtgtgtacaattttgaacatgtgaagtagctgattgtcttatcatcggtacgttataagagctgaaatcatcttttggatctcttatagGTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCGAGAGTTGAGTCCCTTACTTAGGGACTACCGGCGTTTGCTGGGCACTCATC

Basic information

species Physcomitrella patens
transcript PP1S70_16V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193723|gb|FC368689.1|FC368689
EST:     TGTCCGAAGCTGATCAGAATAGTCCAGCTACAGCAACTTCACTTCTCAAG                         GTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCGA
genomic: TGTCCGAAGCTGATCAGAATAGTCCAGCTACAGCAACTTCACTTCTCAAGgtgcatattt ... tctcttatagGTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCGA
EST: gi|162179250|gb|FC356755.1|FC356755
EST:     TGTCCGAAGCTGATCAGAATAGTCCAGCTACAGCAACTTCACTTCTCAAG                         GTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCGA
genomic: TGTCCGAAGCTGATCAGAATAGTCCAGCTACAGCAACTTCACTTCTCAAGgtgcatattt ... tctcttatagGTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCGA
EST: gi|37824455|gb|BJ582521.1|BJ582521
EST:     GTCCGAAGCTGATCAGAATAGTCCAGCTACAGCAACTTCACTTCTCCAAG                         GTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCG
genomic: GTCCGAAGCTGATCAGAATAGTCCAGCTACAGCAACTTCACTTCT-CAAGgtgcatattt ... tctcttatagGTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttatcatcggtacgttataagagctgaaatcatcttttggatctcttatagGTAGTAAGAGCGCATTGGAACCAATCAAATGCGCAATCTATTCAGCTGCGAGAGTTGAGTCCCTTACTTAGGGACTACCGGCGTTTGCTGGGCACTCATC
                                             tctcttat  CT-rich tract
                  ttataaga  TA-rich tract