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...aagtacagtggtgttgatggttttgaatgaggagtcatgatcaaggaggcctgcgcttgaagtaaaaacttgtctgagatttactgagcttccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGGTTGGAAAGCTTTTGGAGGAAGCCAACTTGAACATTGGATATGATGCTG
species | Physcomitrella patens |
transcript | PP1S378_9V6.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAG ATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGEST: gi|162199528|gb|FC373180.1|FC373180
genomic: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAGgtattatttt ... tccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTG
EST: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAG ATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGEST: gi|162171069|gb|FC346968.1|FC346968
genomic: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAGgtattatttt ... tccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTG
EST: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAG ATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGEST: gi|162171070|gb|FC346969.1|FC346969
genomic: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAGgtattatttt ... tccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTG
EST: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAG ATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGEST: gi|18337353|gb|BJ169377.1|BJ169377
genomic: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAGgtattatttt ... tccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTG
EST: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAG ATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTG
genomic: CAAACTTCGACCAGAAGGTTGGAGTGCAAATTATTCAGAATGCCTTAAAGgtattatttt ... tccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTG
gaggcctgcgcttgaagtaaaaacttgtctgagatttactgagcttccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGGTTGGAAAGCTTTTGGAGGAAGCCAACTTGAACATTGGATATGATGCTG
cttccgtt CT-rich tract
aagtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtacagtggtgttgatggttttgaatgaggagtcatgatcaaggaggcctgcgcttgaagtaaaaacttgtctgagatttactgagcttccgttgcagATGCCTGCGTACACAATTGCACGCAATGCTGGAGTCGAGGGAGCTGTGGTGGTTGGAAAGCTTTTGGAGGAAGCCAACTTGAACATTGGATATGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG